mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGTGGGGTGGGGGATGGGGG CCCGTCCCCCCCCCGCTCCG AGCGCCGTGGGACAGGAGAAGCTGTGGGGTGGGGGATGGGGGACAGGGCACGGATGTGGGCCTCTCTGTGGGCTGTCCCCGTCCCCCCCCCGCTCCGTTCCCAATAAATCCGTTA TTTGCGGCGGAGCGGCGGCGCGAAGATGTCTATCACATCTCCCTGGAGCACGAGATTCTGCTCCACCCGCGCTACTTCGGGCCCAACCTGCTGAGCACCGTCAAGCAGAAGCTCTTCACTGAGGTGGAGGGGACCTGCACCGGGAAGTACGGCTTCGTGATCGCGGTGACCACCATCGACAACATCGGCGCGGGCGTCATCCAGCCGGGCCGCGGCTTCTTTGTCTGTACCCCGTGCGCTACAAGGCCATCGTCTTCCGGCCCTTCAAGGGGGAGCTGGTGGACGCCGTGGTCACGCAGGTCAACAAGGTGGGGCTGTTCACAGAGATCGGCCCCATGTCGTGCTTCATCTCCCGCCACTCCATCCCATCCTAGATGGAATTCGACCCCAACTCCAACCCTCCGTGCTACAAAACCGTGGACGAGGACATCGTTATCCAGCAGGACGATGAGATCCGCCTGAAGATAGTGGGGACGCGCGTGGACAAGAATGACATCTTCGCCATCGGATCGCTGATGGACGATTACCTCGGTCTGGTCAGCTGAGCGCCGTGGGACAGGAGAAGCTGTGGGGTGGGGGATGGGGGACAGGGCACGGATGTGGGCCTCTCTGTGGGCTGTCCCCGTCCCCCCCCCGCTCCGTTCCCAATAAATCCGTTATATTTAGGTCAAAAA 5 1 5' arm Gallus_gallus mirnest 100 100 -53.3 ((((...(((((..((((.......((((.(((((((((((.((((..((((((..........))))))..))))))))))))))))))).))))..))))).......)))). (-53.3)