mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGTAGGGCCGTGGGACGGCA CCGTCCCGCGGCTCTCGGG GGGCGGAGGGCGCGGGTCGCCTTCCGTCCCGCGGCTCTCGGGCGGCCGTAGGGCCGTGGGACGGCAGCTCCGAGCCGTGCGCCGTG CTTCGCTGGGCGGAGGGCGCGGGTCGCCTTCCGTCCCGCGGCTCTCGGGCGGCCGTAGGGCCGTGGGACGGCAGCTCCGAGCCGTGCGCCGTGCCGGCGGTGCGGGCGCGCACGCGGCGCCTCGTTGCTGCCGCCCTCGGCGCTTCCTGCCCGGCGGGGCGAGCGATCCCAGCTGAGCTCAGGACGGGGCGGTGTACGTTTTTTTTTTTTTTTCCCCCGTTAATCGATGAATGCAGCCGTGGGCAGACGGCTTTATCATCTGCACGCCGTACGCTTTAATATGATCGGGTCTTGGTGGTTTTCCTGCCGCTCCGTGCCTGGCAGCGGGAAGCTGGCCGCATTGCTAACGTTCGGGATCCGGCGGTACGCGGTGTGCGCTGTGACTCAGAGATGCTGAAGATAAACATAAGCTCATCACAAGGACGGAAGCAAAAGAAGAGTATCTCCTTAAAGACTGTGATTTAGACAAGAGGGAACCGGNNCTTNGATTCATTGTGAANAAAAACCCTCATAATCCTCGGTGGGGTGACATGAAGCTTTACTTAAAACTGCCGGTAATCAAGNGTGCCCTNNAAGTCTGGGGGAATGAGGAATCCTTGNNNGANGGAAAGGAACAGCGNNNNGACAGC 1 1 3' arm Gallus_gallus mirnest 100 gga-mir-1583 1e-43 -52.1 ..((((...((((((.(((.((.((((((((((((((((((....))).))))))))))))))).))...))).)))))).)))). (-52.1)