mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGCTTCTCGGTACCTGCGTT CGTGGTTACAAGGGGAGCCTGGG CAGATCTGGAATGTCGTCCTGTTACTGGGGAGCGTGGTTACAAGGGGAGCCTGGGGGGAAAGGAATGAAACCCGGCTTCTCGGTACCTGCGTTCACCAAAGAGATCGTTTCAGCTGCTGCCC GTCGCGCTGTGGAGCGGTGTTTGTGGTTGTGTCTGCGTGACTCGGGATCGGCTCGGGTGGATTGTGAGAGCCTCACAGCAGGTTCTTAAGAACAAATACCGCTTAAATGGAGGTGAATTAACGTCTGAAGGAATTCTTCCAAGTCTCTTTGGGTTGCCAAAATACTTGGAGTGCCTTCAGATCTGGAATGTCGTCCTGTTACTGGGGAGCGTGGTTACAAGGGGAGCCTGGGGGGAAAGGAATGAAACCCGGCTTCTCGGTACCTGCGTTCACCAAAGAGATCGTTTCAGCTGCTGCCCACAAAGAAAACCTGTGTGAAGCAATGCCTCCTGTTGCCAGCGAAGAGGAGAGCTCCCCTCCCCCACTCCATTGACGTGGGTATGAAGAAAGGTTCTCTGGGGCCCTGGGTAAAGGAAGGAGAAAAAGTGTCGTTCTGGTCTGGATTCCTTTCACGTCTTTGTGGTCTGGGTGAGCCTGAGTGCCATGTGGAAAAAGGGTGGGGTTGGCACTCCCATGTTTACATACTGAGAAGGGCAGCATTTGTTGTTAGCGTGGCCAGCGTGCACGGTGGGCTCTGCTGCAGCCTTCGGAGCTCGTAGCAGCAGCAGCCATTGCGCAGCTCCCGGTGCACAAGGCCTGGATTCAAGCGGCAGTGGTGGATGGAGTCAAAATCCCCACTTCAGAACTATGTGACTTAAAGCACGCTTTGTTTCCCTGCAGTGTCTCTCTCTCTCTCTTTTTAATTATAAGACAGTCTTTCATTAGTAACGGNACAAACAGATTTTGGTCAAAAGCAAGGCTGGATCATCAATAAAAAGGACCCGGTTTTCCAGTGTAAAACAACGAATTCGGAAATCAGGTTATAGAAACGGGGAACCTCAGGGGGGG 2 2 3' arm Gallus_gallus mirnest 100 gga-mir-1580 2e-33 -40.4 (((..((((((((((...((.....(((.((((((((.(((..((((((((.(((...............))))))))))).))).)))))))).))).)).)).))))))))...)))... (-40.4)