mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTGCGTGGTGGTGGGGGACG TCTTCGACCACTACGCAGTCA GCAGCGCCGCGGTCATGCTGAAGTGCGTGGTGGTGGGGGACGGCGCCGTGGGCAAGACGTGCCTGCTGATGAGCTACGCCAACGACGCCTTCCCTGAGGAGTACGTGCCCACCGTCTTCGACCACTACGCAGTCAGCGTTACCGTGGAGGGCA CGGCCGCGGCCGGGGGAAGGCGGCTCCCGCCGGGCCCAGCGCGGCGGCGGATGGCGGGGGGGCCGCGCCCGGCGGGGGCCGGCGGGGGCGCCCGTTGAGCGGCGGCGGCGGAGCGATGCCGGGGGGCCCGGCGCGGCGGGGCGCGCCCGCGGGGCCATGAGGGCGGGCTCCGGCCATGGCCCATGGCAGCGCCGCGGTCATGCTGAAGTGCGTGGTGGTGGGGGACGGCGCCGTGGGCAAGACGTGCCTGCTGATGAGCTACGCCAACGACGCCTTCCCTGAGGAGTACGTGCCCACCGTCTTCGACCACTACGCAGTCAGCGTTACCGTGGAGGGCAAGCAGTACCTGCTGGGGCTCTACGACACCGCCGGGCAGGAAGACTATGACCGTCTGAGACCTTTATCTTATCCTATGACCGATGTCTTCCTTATCTGCTTCTCAGTGGTAAACCCTGCTTCATTTCAAAACGTGAAGGAAGAATGGGTACCGGAGTTGAAGGAATATGCACCTAATGTTCCTTTTTTACTAGTAGGAACACAGANNNATCTTCGTGATGACCCCAAAACTCTGGCAAGATTGAATGA 3 0 5' arm Gallus_gallus mirnest 100 100 -70.6 ((....(((((((.(((((((..(((((((((((.((((((((.((.(((((((.....)))))))...((.((...))))(((((.((((....)))).)).)))))...)))))))).))))))))))).))))))).)))))))...)). (-70.6)