mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGTTGGAACTGAGCAGGAACT TGCCTTTTTAGTATCTGGACCTC ATTCGGCACGAGGTTGGAACTGAGCAGGAACTGCACAGCTGTGGTTTCCATGGCCTGCCAGCATGCCATGCATCTTACAGGAAAGCATCTCATACTTTCTGTACATTGCTTGGATACGTACCAGTGCCTTTTTAGTATCTGGACCTCTGAATTTT GGCAATAAGCTGGNGCTCCACCGCGGTGGCGNGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGTTGGAACTGAGCAGGAACTGCACAGCTGTGGTTTCCATGGCCTGCCAGCATGCCATGCATCTTACAGGAAAGCATCTCATACTTTCTGTACATTGCTTGGATACGTACCAGTGCCTTTTTAGTATCTGGACCTCTGAATTTTCCCTAAATGCCTCTCAGAAACAACGAAAAGCCAAAGGAAGATCTTTTCTGATTTTCTTATGTCATACGTGATTTCTGTTCCTCCTGTTTTGAAAATGACCTTTGATTTCTCCTTCCTGCAGTGCCTGCTTTGACATTGTTCTCTGTGGTTCTGGTCAAACCATACCTACTTTGCTTGTTCCACGTGTTTCTCGTTGCTTAACTCTTTAAATTTGTGGTCACGGGTCTCAGAAAGGCATTTAGTTATATATTTAATATGTTGATGACAGCAATCTGTGGATCCACGTAGAAATTTATACTGAAATAGAATCAGAAATAATGAGGTCAAAATTGAGCTTTTTTTTTTTTTTTAAACAGCTTGCAGTTATGCACAAGTATTTGAGAGACAGGGTTCTCCTTACTGTAACACTGCAGTATTATCATGTTTATATTATCATGTTTATACAAAGAGAAGAAACTGCTGAGAGGTTTTCTCCCTCTCAATCTGTAACTGAATGCAGTATAGCAAAGGTCTGAAATAAACGAGTTTGACATTGAANAANAANAANNNNNNNNNNNNNNNNNNNNAACCTCGAGGGGGGGCCCGGAACCCAATTCGCCCTATAGGGAGTCGTATTACAATTCACTGGCCGTCGTTTTACT 2 2 5' arm Gallus_gallus mirnest 100 gga-mir-1797 9e-18 -39.4 .........(((((((((((((((.(((.((((((..(((((((...))))))).)))..((.(((((.(((...((((((((............))))))))...))).))).)).))...))).))).)))))).))).))))))........ (-39.4)