mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AACCCGAGGAGGACGAGGAGG TCCAGGTCCTTCCGGCGGCG GCGATGGCGGCCTCCAGGTCCTTCCGGCGGCGCAGGTAGGAACCCGAGGAGGACGAGGAGGACGAGCAGC GCGATGGCGGCCTCCAGGTCCTTCCGGCGGCGCAGGTAGGAACCCGAGGAGGACGAGGAGGACGAGCAGCTGGCCGAGGAGGTCAGGTTAAAACTCGAGGAAGCCAAAGAAGTGCAGAGCCTCAGGAAGAGACCCAACGGGGTGAGTGCTGCAGCTCTGCTTGTGGGAGAGAAGTTGCAAGAAGAAGCAACGCTTGTGGATGACCCATTTAAGATAAAATCTGGGGGGATGGTGGACATGAAGAAACTGAAAGAACGAGGCAAGGACAGGATTAATGAAGAGGAAGATCTGAACTTGGGAACTTCCTTCTCAGCTGAAACCAACAGGCGGGATGAGGATGCTGACATGATGAAGTACATTGAGACAGAGCTGAAGAAGAGAAAAGGAATCGTGGAGAATGAAGAACAGAAGGTGAAGCTTAAGAACGCTGAGGACCTCTTCTTGTATGAGCTGCCAGAGAACATCCGTGTCTCCTCGGCCAAGAAGACTGAAGAGATGCTGTCCAACCAGATGCTGAGTGGCATTCCTGAAGTGGACCTGGGAATTGATGCAAAAATAAAAAACATAATCTCAACTGAAGAGGCCAAGGCCAAAGCTGCTGGCAGAGCAGCAGAACAAAAAGAAAGACAGCGAAACTTCCTTTGTTCCCACAAACATGGCTGTTAACTATGTCCAGCACAACAGATTTATCACGAGGAGCTAAATGCACCGGTGAGAAGGACTAAGAAG 5 1 3' arm Gallus_gallus mirnest 100 mmu-mir-1895 0.0002 -23.5 ((....((..(((((..((((((((((..((....))......))).)))))))..)))))....)).)) (-23.5)