mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AACATTCATTGCTGTCGGTGG ACTGAACAATGAATGCAAC AAAGGTCACAATCAACATTCATTGCTGTCGGTGGGTTTAACTATGTGGACAAGCTCACTGAACAATGAATGCAACTGTGGCCCCA ATTCGGCCATTACGGCCGGGGATTCAGAACTGCAGATAGTATAGCACGCAGAGCAGCAATGGGATGTCTGAGCACAAGTGGCTGACTTCCAGGCGACTTCAAGAAGCACATTTGCACATTTATCCTGAATTAAACTGGAATTCTGCACCCTTGACATCCTCCTACTCTCCTGGTGTCTGCGGAAGGAAACAGCGACCTGCACAGCACAACAAAACTACAAATCATCAGTGATCTACAGACAAGCAAACGAAGTGAGCTGAGGGCAATTTAACTACCGCCTTCTGTGTCAGTTCCCCAGAAGTCAATGAGGCATACTATCGGGTCTCCAAGAAAGACATGTGAGAAGCTGCCAGCTCCATGCATGAAGAAGGAAATGGGATAGACAGAGAAGGGTGCTGGTACTGACATTTAAGGATGCTGTCAAGTCAATGGAGTTCTCTTGTAGTGGTTGCTTCAGTGAACATTCAACGCTGTCGGCCTTCATACCGAAGATAGAAACCTAACCAGCACATGAGGTTTCTCCCCTACTCTGCCACGCTTTACAAAAAAGGTCACAATCAACATTCATTGCTGTCGGTGGGTTTAACTATGTGGACAAGCTCACTGAACAATGAATGCAACTGTGGCCCCACATTTTACAGGTGCATTTTGGGAGGAATGTCAGCTCTGAAAGGAATAGTGAGAAACAGACATTTCTTATAGGTTACGTTTTTCTGGTCAAAAATTTGTTAAGGATATCCAATTAACTCTTCTTTGGTATTAATGTATTTAACTATGTTGACTAAAAAAAAGCACTGCATTTTTCTGGATATCACCCCTCACAGGGTTCAGCACTCTGAACTGGAATAATGCTGTTCAGTATATATGTGGAAAAGTAATAATATAGAGAACTTGGGATATATGT 3 2 5' arm Gallus_gallus mirnest mir-181 0.0000000003 gga-mir-181b-1 4e-43 -30.8 ...(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))))))... (-30.8)