mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGACGGAGAACTGATAAGGG CTTATCACTTCTTCCGCCGAG CTCCTGGTTCTGCACGCTCCCTTATCACTTCTTCCGCCGAGCTCGTGTCTCTGAGTCAGCTGGACGGAGAACTGATAAGGGCCCGTGCCGAACACCAA GTCAGGTCGAGCGCGAAAGGTTGGGACTGAGCCGCGTCTGCTGTAAGCCCAACATCGGAAACTTCCACCGGTGTTTTCGGACGGGAACAGGCGGCATTTGGCGAAGGAAAGAGGACTTGACGCAGACATGACTCCGTTCGTGAACACTGAGATGTACGTGTTCAACGATTTAGATGTAAACGTGACTCTCTACAAAGTAGTGTGTAGTTTCCTCAGAACATTTTACTTTAATCACTATCGTCAAACGTCGTCGGCGAATCTTCAACATCAAGACAAGACAAGAAGCGACTGGGTCTTACCGACTATCGGACTACGTTACCAGCATCTCCAACGATGTCTTAAGACTAGACGGTTCCCATGGGCGCTGTGTGCAGCAAGGCGTGAACCCCGCGGAATAGATCACCGATCCACCGCCCAGACCTGCGTGGGGCCCTGTCCGCCCCTGCCCCGAGGAACTCTCCTGGTTCTGCACGCTCCCTTATCACTTCTTCCGCCGAGCTCGTGTCTCTGAGTCAGCTGGACGGAGAACTGATAAGGGCCCGTGCCGAACACCAATCCATCCGTCCATATTTCCTTCTGTCTATCCTACAGAAGTAGCAGTAACTTGTAGTAGCGCTAGTAGTCACATATTTTGTTGCAACAATAGGTTCTAACCCCCTGTCGCGACGGTAAGTGGCATACCTATGGCGTGAATCCATAGACAAAACGCATACATAGAAAGTAGGACAACTGATACCACTGTACTCTGTGTGGAATACCTTTAATCTATCCAGATCCCTTGAAATTATCTTCAAAAGTAGTTGTAACCCACACCAATTGTTGGCGATCACCATAGCGTTGTAAATTTACTGACGGGCAGTTTTTA 1 2 3' arm Branchiostoma_floridae mirnest mir-184 8e-42 bfl-mir-184 8e-51 -38.8 ......((((.(((((..(((((((((.((((.((((((.(((((......)))))....))).))))))).)))))))))..))))).))))..... (-38.8)