mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGTGCGGAAATGCTTCTGC GGAATCACTTCCGCACAAAC ACGTGACACTCTATGAATCTAGTGGAATCACTTCCGCACAAACTAGATGAATGAAACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGTCTCCCT GACTCTAATGCGGATCCAGACGGGCAGGTTGTCAGTGCGGATTATATTCCCAGTGGAGAGTAATAGAGGTCTGCACCTGCTGGTCACCATGAGGAATATGGGGATCTTCCAGCTCATGATGAAGAAGAAAGAACTTATTCCTCTGATTGCATTTGTCTCCTTTGCTGGAATAGGAGCAACGCTGGCGAGTCTCAATGCTATGAGAAAATCTGATGTGATTTTTAACAAGACTGGCAACCCAGAACCATGGGAACATGTGAACCCTACCCAACCCCAAAAGCTGATAACAATCAACCAGGAATGGAAGCCCATAGAAGAGCTGGAGAAAGTCAAAAAAATGATGAAGTGATGGGTGCCTGCCTCTTCACGTGACACTCTATGAATCTAGTGGAATCACTTCCGCACAAACTAGATGAATGAAACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGTCTCCCTCCAGCTTTTTTGGACTTTAGACATTACAGTTTGTTTTTTCAGAAGTTTCCCTGCATACATCCCCCAAAGTCCAAAATAACGGGGATTTGCTTGCACTTAGAACAGCCATGTGTTGCCTTGAAGAAAAGATGTTCAGCGTTCTCTGCATTCTTGAAGTATATATAAAGGCCTTTATCCATTTGTGAGCCCTTAAAGAGATGAACTAATTTTGTCTGAGGTATCCTGTAGCCTTATGTTTTCTAT 3 0 3' arm Anolis_carolinensis mirnest mir-147 2e-18 mdo-mir-147b 1e-24 -35 ....((.((((((.((((.((((((((.((.(((((((((....................))))))))).)).)))))))).)))).)))))).))... (-35)