mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATTATTACTTTTGGTATCCC GTTACCATTGAATGAGATGGA GGGTTACCATTGAATGAGATGGATCAGTGGATATTAAGATGAGGTTACAAATTTTGTTAAGTTCAGCCATTATTACTTTTGGTATCCCAGAACATGACAAATTATGAATAAAACAAG GGGTTACCATTGAATGAGATGGATCAGTGGATATTAAGATGAGGTTACAAATTTTGTTAAGTTCAGCCATTATTACTTTTGGTATCCCAGAACATGACAAATTATGAATAAAACAAGTATACCTAACAAAAACGAGAAAATCGGCACAAGCAAAAGCAGCGACAACAGACAAAAAAACAACCCGAAAAAAGCCTGGAAAACGAATGCCCACAATCCATAACGCCTCCTTGTGGGCCCCCTGGGCCTTCAAAAAGCTTTAAAAACCTTTCCTTTGGCCCCGGGGCCCACCATGTAACTGACAGTGGTTATCCCGTGTTTTCCCCAGGAAATCTGGGTACACGAACAAGGCGCTGGGCACCCCCCCAAATAAAAAAACGCCCCCCGGGACCACCCAAAGGGCCTCCGCCACCAACTTAAACACGGGAGCTTTCGGGCGGTCCTTTTTCGGCGGGATCTATGCCCCGAGGCGGATTCCCCCCGCGCACCCCTCCAAATTCCGACAGTTTCCGCGGGCCCGCGCATGTCGGCCATTTTATCCCGGTAAACGCACACGGGTCCGGGAAATTACTCCTTCTTCGAGGCGTGTTCGCGCCCCGGAAACCTTGGGGGGACGCGCACCATGGTATAATAGATATGGGGGGCGCGTGGGGAGGGGAAATCGCGTGGCGAAATATCTCGTGTCCCACGGTGCACCCGCCCCCCCCCCCTAGGGACACCCCCCTGCGGTCGCCCCAGCCCTAGTTGTGGGCGCAGAAGCCACGGAAGCACTCTTTTGCGCCCCCCACGGGTAGCGCCGCCCGACATAACGGTGTGTGGGGTGCACCATCACACCAAAATGTCCCCCCGCTATCACATATTATTCTAAGCGGTCACGCCGCGCTTTTCACGTAGCGAGTGTGAGAAAAGGTGGTGGCCTCGGGGGATAAGATCCTCCCGCCCCTCAGGCGGCACTCTTTGACTTCTCCCCCCACAATCACGTAACACAAGTGACTCGTCTTCTCATCCTGTCGTTAACGCCCCCCCTGTATCACGCGGAGCGAGTACCCGCGGCCCCCCCCGCCCCGCTTTTTCCTACCGCGCGCATGATCCCGCCGTCACCCTCGCTNTTGTGCCCCGCCGACATAACGCGCGTCGCGAGAAACGTATGGTGTTTGCACATACAATCCCCTCGCGCGGAGTTCCTTCCCACC 3 2 3' arm Homo_sapiens mirnest 100 100 -20.7 (((.(((((..((.((((((((.....(((((..((((((..........))))))....))))).))))).))).)).))))).)))....(((((....)))))........... (-20.7)