mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GAATCTTGATGATGCTCCATC TGCAGCATCATCAAGATTCCC TATTGCCGCTGCAGCATCATCAAGATTCCCACATCAAAGAGCCATCGGAGTGTAGGAAGGGACCACAAAAGTCACCATCACCACCACGCACTGAGTCTCAATACTTGTGAATCTTGATGATGCTCCATCCGCAAA TTGGGATAATATATAGAGATTTTAAGATATAGAATAGGGTTTTTGCAGAATAATTAACAAGTTCTGCCTTCATTGTTCGAACCTGATATTGTCATGATGGGCACCGTCCTCGATCTTCTGCAACTGTTTTGTGGTTTTGGAGATGATTTATATAAAAATTAGCCATTTATTGCCGCTGCAGCATCATCAAGATTCCCACATCAAAGAGCCATCGGAGTGTAGGAAGGGACCACAAAAGTCACCATCACCACCACGCACTGAGTCTCAATACTTGTGAATCTTGATGATGCTCCATCCGCAAACAGTGACTGGTGTCTTGAGATCTTCTTTCATCATATGAATCCATGCAAAAGTAAAGGAATAAAGAAAGAAAACGAGTAAAAAGAGATGTAAAGGAAGAAGGAACCTAGCCCTAACCTCAAGACCACATTCTATGAAGGAAAAAGTAAAGGCAAATGCAAGGAAGGACAGCAGAACGCTTCAAAACCATATCTCAGCTTATCAAATAAACAAGACCCACTTGGTAGAAAAGCTATTCTACGGTACTCTATACGTACCCACAATCAAAAACTTGAAAAAGATGAGAGAATGTGAAGAGAAAAGCTAATAGTATCTGAGCAAAGGACTAAAGGAGGGACAAGAGGGAAGAGCTAGC 3 0 3' arm Vitis_vinifera mirnest mir-172 2e-71 vvi-MIR172c 1e-72 -40.9 ..((((...((.((((((((((((((((..(((.....(((...((((.((((..((.(((((.......))).)).))......)))).))))..)))......))))))))))))))))))).))...)))). (-40.9)