mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCATAGCATCATGAGCAATCA ACTGCTCATGATATTATATCAT CAATCAAGAATGCATAGCATCATGAGCAATCAGCCTTAGATTTTAGCAGAGTGACTGCTCATGATATTATATCATTTCAATTA TTTTTTTTTTTTTTTGCAATTTTACTCCATAAATCCCAATGTCATCAGCTAAATGACAATGTGATACATCGAATTAATACCAATAATGCTTGAATTAGATTCATGGATATTAAGAGAAAGGAATGCTGCTCCCTAAGCAGCAACTGAAAATGATTAATCATACTGGAAATGCATATACATGAAAGCATTGTAGCAGAAGATAGAAAAGAAGATAGATGATGATCAGCTGATCTTAAATTAGAAGGAGTACTTTTTTTTAAGGACTTCCAAAGTCCCAGCTACAGCACACATAAATCCAATCAAGAATGCATAGCATCATGAGCAATCAGCCTTAGATTTTAGCAGAGTGACTGCTCATGATATTATATCATTTCAATTAGCTCCAATGTGCTGCATCCAAAATGGAATCGGCTCATCGAAAGCCACCGCCCAGAGCCGGAGCCCAATAATCTGCTCCATTGTCGCTCCCAACTTGCAGTGTGCATGAAACAGGCACCAGACACAACCCTCTACTTCTCAGGTCTTTCTTTGGTTCTTCATGAGATTCCTGGTCGGAAGCTCCTTTCCTCTTCATGCCGTTATCATTCAACAGCTGGCCAGGGTCTTCAC 3 1 5' arm Vitis_vinifera mirnest 100 100 -19.9 .......(((((.((((.((((((((((.(((..(((...........)))))).)))))))))).))))..)))))...... (-19.9)