mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCAAAGGGATCGCATTGTTT GCTTGCGAATCTTTTTGCATC CCTCGCACGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAAAGGACAGTCTCTAATCTCAAGCTTGCGAATCTTTTTGCATCCGTTCAATACAT ATAGGTAAAAACAACGCATTAACATATTAAAGAAGTGAAATGGCGTCTAATATTTATGTATAATAAAAACTAGCAAAGTGCAAGAATACAACAAAGTACAAACCACTAAATATCCGGAGGGGACTAAAATTGCTTTAATCAGTCAGCCTAAACAAAGTACAAACAGCTTAATAAATAAGAAAAAATTAAATAAAACTGAACCTAAAATGCACCTACAGAGTCCATACATAGTCTGGTGCATCCTCCCTTTTCCCAGCCACTGTACGATACAAATACATCTTCTCGACTCTCTGCCCATCTTCCACGTAACAATCTGCCTGTTCACTTTCACTGAAAATCTCCACATTCAACCTCGGCATCTTCTTTGCCAGTGTCTTGCATGCTTCTACAGTCACCTCGCACGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAAAGGACAGTCTCTAATCTCAAGCTTGCGAATCTTTTTGCATCCGTTCAATACATAGAGCATTCCCTTGTCACTCTCGCCAGCAAATGCAATAGATAACATTTCAAGCTGCTCAGCATACATACCAATGTAAAGGAAAACCTGGTCGGTCAACTGACCTGAGAGTGATAGCCGCCTCAGTCGCTTGCATGACTGCACAATCGCCCCAAAACCTTCATCTAGTGGCTGCATTGTGTCAGGGTCAGGTTTTGTTGCATCCAGGATGCATAACCTAAATCGGATAAAATTTGGGCAGTTTTTGGCCACTGCTATGAGAGCAGCATTGGTCATCTGGTGACAGAAGTAGAGTAATGAGTGAAGCTTAAGACATCCCATTGATATCGCTACAAGTCCTTTTTTCGGT 2 2 5' arm Medicago_truncatula mirnest 100 sbi-MIR393 0.0004 -25.4 ........((((..((.(((((((((((((..((((............(((((.((.((.((.....)).)).))..)))))............)))).)))).))))))))).)).))))........ (-25.4)