mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCTCCCTCAAGGCTTCAGA TGCTGCTCAGGGGAGAGAAG CCTTCCTTATTCTGCTGCTCAGGGGAGAGAAGAAGAAGAAGAAAGAAGGGGGTTTCTTTGCTTGTTTCTTACTCTTTCTCTACCCCCCTTCATTCTATATCAATCAATCCTCTTCGAATTCTTTTCAATTAGGGTTTCATCGATCTGTTTCTCTCCCTCAAGGCTTCAGAAGAAAAAAA GGCGGGGATCATATCTACCTTCCTTATTCTGCTGCTCAGGGGAGAGAAGAAGAAGAAGAAAGAAGGGGGTTTCTTTGCTTGTTTCTTACTCTTTCTCTACCCCCCTTCATTCTATATCAATCAATCCTCTTCGAATTCTTTTCAATTAGGGTTTCATCGATCTGTTTCTCTCCCTCAAGGCTTCAGAAGAAAAAAATCAATAATTAAGGATAATGACATCAAAAACAATAAGGAGAAGACTCCATCATGGGGATGTTGATGGTAAAAAGCACGAGCATTTAGTAGGTGCAGATTTAGGCGACCTACAAGAGCCTTTACTAGGGAAAAATGATGACTATAAAGCTAAGCAGTTGGAGGTGCAAAAGCGGGAAGGTAATTTGTATGATGCAAAAAGTAAAGAGCGCCTCCACTGGACGTTTCTACTCTCTAACATAATTTCCGAATGGGCACAATGGTTAGCAAGAGTACTACTCGGACCCGGATCGTTTATTGTACGCGCCTTGACTTTACCTTCAACGATAGGAAGTGCACCCACAAAGAAGCTTCTTCCATCACTTACTCCGTTACAGGAATCAAGACTCAAAGCTTTGCAGAAAAGATTGGAGGTCCCATTTGATGGTTCTTCTTTGGAGCACCAAGATGCACTAAGGACGTTATGGAGGTCAGCGTATCCAAACCGAGATCTCCCAGGACTTAAATCGGAGGCTTGGAAAGATATGGGGTGGCAAGGAAATGATCCTTCTACCGACTTCAGGGGTGGAGGGTTCATATCTCTAGAGAATCTTATCTTCTTTGCCAACACATATCCGGAAGCTTTTCAAGACCTTCTA 4 1 3' arm Helianthus_ciliaris mirnest 100 100 -44.7 .........(((((..(((..(((((((((((.(((...((((.((((((((...........((.....))...........)))))))).))))...((.((.((((((....(((.....)))....))))))..)).))))).)))))))))))...)))..)))))........ (-44.7)