mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAAACCGAACCGAACCGAACC TGCGGTTTATTCGGTTTTCG CACTTTTTACCTGTAAACCGAAAACCGAACCGAACCGAACCGAAATTGCGGTTTATTCGGTTTTCGGTTGCGGGTTCGGTTAT CCTTCCAACACCAAAAAAACCCTGACCCCGACGCGTCTCCTCTCCCGTTCGCGGTTCGCCTCTCCCTGCACCACCGCCGCCCTCCTCCCCAGCCCCGGCGGTGGCCGTCGCAGGCTATGGAGTGGCGTGTTTGGGACCTGACGGTGGCCGCAGGCACGCCTTCCCCCGTCGTTGCCTCCTCCCGTCAGTTTGCGTGTTCTTGATGAAACCCTAGCTTCCTGTTCTCGATGGCCCCGGCGGCGTCGCGAGCCACACCTGGCGGCGCAAGCGCGTGGCGCGGCCGACCCCGGCTATGCATGGCCTCTTTCTCGCTGACGGCGGCGGCGGCTCAGCTCGGGTCGGTTCCTCCCTTCTCTTCTTATTTCTCCCATTCTCCCCTACCTTTGACTCGCTCCCCCTTGGCTGTGGATGGCGATTTGTATTCAGATGGATTGTCCGCATCAGCTGCCTCCCCTACCTCCACTTTGTTGCGTTGCCAACATGGCTGCTCTGCTTGTTGCGGTGGAGGATGTGGCTCAGGCGCACGGCGCCCCTCCTTCGACAGCTGGGGTTCACCCTAGGCACTTTTTACCTGTAAACCGAAAACCGAACCGAACCGAACCGAAATTGCGGTTTATTCGGTTTTCGGTTGCGGGTTCGGTTATGGTTTTTGTGGTATTCGGTGTTCGGTCTCGGCTTCGGTTTTATACTGAAACCGAACCGAATAACAAAATAAACCGAAATACCCTCTTTCACTTCTTTATCGCGGATAATTTACTGTTTCAATAATGAAGAACTTTG 5 1 5' arm Sorghum_bicolor mirnest 100 100 -33.5 .(((....((((((((.((((((((((((..((((((...........)))))).))))))))))))))))))))..)))... (-33.5)