mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTATTTTGTTTTTTGTTTTT AAAAAAAAGATATGGTTTGGG TATTTTTTTTTTTTATTTTGTTTTTTGTTTTTTCTTAAAGGAAGATGTTTGAGTAGAATTTTTGATTTTTTGTATGTAAAAAAGAAAGAAGGTTTTGAATGTTGGTTTGTGGGTTTAAAAAAAAAAGATATGGTTTGGGGTTTGAAA CTCTTAGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTAAGGGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTATTTTGTTTTTTGTTTTTTCTTAAAGGAAGATGTTTGAGTAGAATTTTTGATTTTTTGTATGTAAAAAAGAAAGAAGGTTTTGAATGTTGGTTTGTGGGTTTAAAAAAAAAAGATATGGTTTGGGGTTTGAAAGTTTATTTTGGGGAATGAAAATAATAGAGTGGGGGGGGAAATGGTTGATTGTGAAGGGAAAGGAAATAAAATTTGTGGGAAAGTTGTTATTGTTATTTTTAAAAATTTTTTTTTTTGGGGGGAGGGGGTGATAAATTTTTTTTTAGGAAAAATGTTTTTTGGGGGGGGGGGATTTTTTTTTTTTTGGTTTAGGGGGGGGGGGGGGAGATTTTGAGAGTTTGGTGGTTGGGGGTTAAAAAGGGGTTGGGAATAAAATATGGTGTGTGTTTTGGGGGTTGAATTAAAATTTTGGGGGGGGGGGGGGGGTTAATTTTTAAATAAAAATGGTAGGTTTGGGGAATAAAAAGGGGTGGGGTGAAGGGATTTATTTTAGGGGGGGGGGGGAGAAAAAATAAATTTTTGGGGGGGGGGGGGGTTTTTTAATGTGGGAGGGGGGGGGGGGGAAAAATTTTGTGGTTGTTTAATAAATTTTTTTAAAGTTTTTGGGGGGGGGAAAATGGGGGTATTTTTTTTTGTGGGGGGGGGGGGGAATAAAAAGGGGGGGGGGGGGGGGGGGGTGTTATTTTTTGAGGGGGGGTGGGGTGATTTTTTTGGGGGGGGGGGGGGGGGGGAATGGGGTGTTGGGGGGAATTTTTAAAGTGGGGTTGGGGGGGGGGGGGGGTGATGGGGTTTTTTTGGGTAATTATTTTTTTTTTTGTGGGGGTTAAAATAGAAGGGAGTTGGGGTTTTTTTTTATTTTGTTTTAGGGGGGAGGTGAAGTGGGGGGGTTTTTGGGGGGGAGGATATTTAAGGGGGGGGGGTATTTTAAGAATTGAAAAGGTTTTTTTTTTTTTTTATAGGGGGGGGGTTTTAAATATTATATTGAGGGAGGGTGTGTGTTTTTAAAGGGGGGGGCATCTTTTTAAAAAAAGGGGGTTTTTTTTTTTCTATGGGGGGAGGGGAGTTTTTTTGTTATATGGGGGGGTGTTTTTTTTTTAGGAGGGGGGTGTTTTTATAAAATAAGGGGGGGTGGGTTTTATAATAAAATAGAGGGGGGTTTTTTTAAAGATGGGGCCGGTTGGAAGAAAA 4 0 5' arm Strongylocentrotus_purpuratus mirnest 100 100 -23.4 ..((((..((((..(((.((((((((.(((((.((((.(((..((((((((((.....(((((..(((((((....)))))))..)))))...))))))))))..))).))))...))))).)))))))).)))..))))...)))) (-23.4)