mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCGTCATCTTGC AAGATGGAGCGATACTGGTCAGG ATTCATCATCATCATCATCATCGTCATCTTGCGTTCTAAATCCATTCAATTTCACGGGGAATTATCTGTTTCGTAAGATGGAGCGATACTGGTCAGGAAGTA AAAAAAAGAAAAATGCGGAACTCAGTGGTAGCGTACAGCTTCCGCCATTTTCCCCCTTTAATGCACCGTTGTTCACTCCCCTTGTTCTGCCTCAACCGTCATCCTCCGCTACCTTCACCATCCACCCTTCTCTTCAAAACCTCTTCATCATCATATTCATCATCATCATCATCATCGTCATCTTGCGTTCTAAATCCATTCAATTTCACGGGGAATTATCTGTTTCGTAAGATGGAGCGATACTGGTCAGGAAGTAGTGTCAACAAGAACAAAGGCATGGTGGAGCATTTGCAACGTTACGGAGTCATTCAGTCTAAAAAAGTGGCTGAAGTAATGGAGACTGTTGATCGGGCGTTGTTTGTACCGGATGGATCCCCGGCCTATGAAGACAGTCCCATGTCAATAGGTTTTAATGCCACAATTTCTGCACCTCATATGCATGCTACTTGTCTTCAGCTATTGGAGAAACACTTACAGCCCGGGATGCATGCTTTAGATGTTGGTTCAGGAACGGGGTACTTGACGGCATGTTTTGCACTTATGGTTGGCCCACAGGGGCGCACAATTGGCGTTGAGCATATTCCCGAGCTGGTTGCAATGTCTCTTAAGAATGTTGAAAAAAGTGCAGCTGCTCCATTACTCAAAGATGGATCTCTCGCCTTACATGTTGGTGATGGCAGAGAAGGGTGGCCAGAGTTTGCTCCTTATGATGCTATTCATGTTGGGGCAGCGGCTCCGGAAATTCCAAAGCCACTTATAGAACAGTTGAAACCAGGGGGAAGGTTGGTTATACCAGTCGGTAACATATTTCAGGAACTGAAAGTTGTTGACAAAAACCAGGATGGTTCTGTGACTGTTCGTACCGAGACTTCAGTACGTTATGTCCCTCTCACAAGTAGGGAACCCAATTACC 4 2 5' arm Helianthus_tuberosus mirnest 100 100 -18.2 ........((...((((..((((((((((((((...(((.(((..............))).))).......)))))))))..)))))..))))...)).... (-18.2)