mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA ACGACGACGATGAAGATGAAT ATTGACGACGACGACGACGACGATGAAGATGAATATGACGGAGAAGAGAATGCGGATGTTGTTGGAAAAGCGTTGCACAAGTGCGCCCAAATATCTGCTCAACTACGGAGTGACCTCTACGGATCATCATCATCATCATCATCATCTTCTTCTT CGCGGGGGAAAAGGGGGTTGAAGTAGAGAGAGAAATCCAACCAAGGCGACGCCATTCCATCTACTTCTTCTTCCTCCTCCGTTCCAATGAAGCGAGGGTCAGAGTCAATCGAAATATCAGACGAGGAGTGGTCCAATCACGGCTTCGATTCCTCCCGAATCCTCACCAAACCACCACCCTCCTCCTCTGCTTCCAAGGCACCACCGCCAATCGGGTCTTTCGCTTTCAGAGCCCGAACCTCTACTTCCTCTGACTCCTCTGACTGTGTCGAAATCATCAACCACCAGCAGCAGCACGAGGAGGTTTTGGAGGACGATGACTTTGAACAGCCTCCCTCCACCACCATTGCCAGCCGCGGCCGGAGGTTTATAATTGACGACGACGACGACGACGATGAAGATGAATATGACGGAGAAGAGAATGCGGATGTTGTTGGAAAAGCGTTGCACAAGTGCGCCCAAATATCTGCTCAACTACGGAGTGACCTCTACGGATCATCATCATCATCATCATCATCTTCTTCTTCTGCTCATGCGTATGCTGAAGTTGACGCTTCCTCTCTCAGAATCGTCACTCATGATGATATATGTGAAGCATGTGGAGCTGGGGATTCTGGATTTCAACCTCTTCTTAAACCCTACCAGCTTGTTGGTGTCAATTTCCTCATGCTTTTGTACAGGAGGAAAGTTGCAGGAGCAATATTGGCAGATGAGATGGGACTTGGTAAGACTATTCAGGCGATAACACATCTTACTCTGTTGAACCACTTGGAAGATGACCCGGGACCTCATTTGATCGTATGTCCTGCTTCTGTTTT 5 0 3' arm Helianthus_tuberosus mirnest 100 100 -35.7 ...((.((.((.((.((.((.(((((.(((((...((..((((....((..(((((((((...((....(((((.....))))).))..))))))))))).(((....)))...)))).))..))))).))))).)).)).)).)).)).)).. (-35.7)