mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGCGACAAGTAATTCCGGAC CTGGAGATACTTGTCAGGGAA CATAGCTACATACTCCCTACATCTGGAGATACTTGTCAGGGAAATGGATTATCTAAACGTGTTTTAGTTTTAATGCATCCATTTTCCATTTCTGCGACAAGTAATTCCGGACGAAGGGAGTCTATAAGAAG ATGCAAATCTCCCTTTGTTGTGCTGCTTCATTCAGGCAAAACATTCCTAAACGAAAACTAATACTGAACAAGGGTCTAGTATCATAGCAATACCAACTACTGTAAGTAAAAGGCATCATGACTTGTAGAGAGCAAGCTAAAATAAAACATAGCTACATACTCCCTACATCTGGAGATACTTGTCAGGGAAATGGATTATCTAAACGTGTTTTAGTTTTAATGCATCCATTTTCCATTTCTGCGACAAGTAATTCCGGACGAAGGGAGTCTATAAGAAGGGTGTCAAATTATCATTCGAATTTCATCCTTGACAGTTGACACCCGCGCAACATTACAAGAAAAGAAAACTAGCGTTCTTGACTAGATAATCTCTTTGCTAGTCAAGTCGACAAACAAGAAATCACAAGCTGCGCCAGTTGTCCTTTCACAGGTTTAACACCTATATTCTCCATATCACGGAGAACAGAAGAGAATCATGGGAGCATGAAAGGTCAGCTATGCACATATGAGTCTTCTTGCAGCAAACCCATTAAAATGCAGTAACCAACTGCCGAACAAGGCTATTGTAGGCTTGTAGCTACC 4 0 3' arm Hordeum_vulgare mirnest MIR1122 0.00000003 tae-MIR1135 0.0000001 -41.2 ...........(((((((...(((((((.((((((((..(((((((((..........((((.(((....))).))))......)))))))))..)))))))).)))))))...))))))).......... (-41.2)