mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCTGGTGTTGTGAAGTATTG AAGCTTTATTTATACCCCTCC TTTCCACTGAGAGCTGGTGTTGTGAAGTATTGTGTGGCAGTGTTACCTGTGCCCCATTCCCAAAATCTGTGCACCAAAGCTTTATTTATACCCCTCCAGTAACTG CATGGAAATTGAGGTCCTGGTGGACGCCGACCCTGTGGTGGACAACTCACAGAAGCGGTACCGGGCCGCCAGTGCCTTCTTCACCTATGTGTCCCTGAACCAGGATGGCAAGCCACTGCCTGTACCTCAGCTTGTGCCTGAGACTGAGGATGAGAAGAAGCGCTTTGAAGAAGGCAAAGGCCGCTATCTGCAGATGAAGGCGAAGCGGCAGGGCCACACGGAGCCTCAGCCCTAGGTGTCTTCCTGCTGCCCCTGGGGTCAGCACAGTTGAGGCGGCAGCCCCATGTGCAGTCACTTAGAAGTAACCCCCTTGGCCAGAACCCCATTTCCACTGAGAGCTGGTGTTGTGAAGTATTGTGTGGCAGTGTTACCTGTGCCCCATTCCCAAAATCTGTGCACCAAAGCTTTATTTATACCCCTCCAGTAACTGCTCCCCAGTGTTGTCCCAAAGGCCACCACGGACACCAGAGCACTGAATGGTCTGTGAAGAAACCAGCACCACTAATAAAGCTGCTGTCTGGCTGG 3 2 5' arm Peromyscus_polionotus_subgriseus mirnest 100 100 -24.2 .....((((.(((..(((((.(((((((.(((.(((((((........(((...))).........)))).)))))).)))))))..))))).)))))))..... (-24.2)