mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGCCGCTGCCCCTGAGGCAC GCCTCAAGGGTAGCGCAAAC CCGCCCTGACAAAGCCGCTGCCCCTGAGGCACCTCAGGCACCTCAGTTCAACGCGGAGTCCGTCCGGTCCGTGCTGAAAGCTCTGCCCGCCATCACCGACAGCCTCAAGGGTAGCGCAAACTCCGGTGA CCCTCCTGTGCCTGGTGGCCCTGAGCCACGCCCGCCCTGACAAAGCCGCTGCCCCTGAGGCACCTCAGGCACCTCAGTTCAACGCGGAGTCCGTCCGGTCCGTGCTGAAAGCTCTGCCCGCCATCACCGACAGCCTCAAGGGTAGCGCAAACTCCGGTGACACCGTCCGCCGCGTGAGCGCTGCCGTCCTTGACATAGTGAAAGGGAACGCCAATGATGAAAATCGCCAGCAGGTGGAAGACGCGGCCCAGCTCACCAACGCCATCCTCGACACCGTCTCTGATCTAGTCAAGGATCTCCCGCCAGTTGATTTCAATTTCAAGGCCCCCAAAATCGAAATCCCTGAAGTCGTCATCCCCAAAGTTGTGATTCCCGAGATTCCCGAAATTGTGATCCCGGAATTCAAGATTCCCGATATTAAAATTCCCAACTTCCAGACCGATGATTCCTTCAAGGTCGATGTTCCCGAGATCGTGATTCCCGAAGTTGTCATCCCGAAATTTAACATTCCTGAGACCCCAGAAGTTGTTATCCCCAAATTCACTGCTCCCGAAATTGATATCCCTGAATTCTAAATAATGACACTGATAGCCTTTCTTATTTTCTGAAATGATTCTTTCTTGTTACAACCTGTTCCTTCGATGTAGTCAAACGACCGAAAATGATTAAATTAATATTCATAGAACCTACTTGTTAAATTATTGATAAGCAACAGCAGCACAATCACTAGACAAATATTTTGCAAGACTATATATGTATCCTTGTTAGTACAA 5 1 5' arm Gammarus_pulex mirnest 100 100 -40.3 .((((..((....((.(((((((.((((((......((((......((((.((((((..((....)))))))).)))).....))))..............)))))).)))))))))....)).)))). (-40.3)