mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGGATTACTAGTGTCGGCCG GCTCATGTACAGGTAATCTTGGA CCACGAATACAAAGGATTACTAGTGTCGGCCGATGGATACATGAACTTGCAACTAGCAAACACTGAGGAAATCGTCGACGGCTCATGTACAGGTAATCTTGGAGAAGTTCT ATGATTTCGGCGACTTGCTTTGGCGGCGCTTTGTTTAGGTTATATTTTTCAATTTCTAGGTAAAAGAAGTAAACAGCAAAAATGGCGGCGGCTATGCCAATCAACCCTAAACCCTTCCTGAACAGTCTTACTGGCAAATCAGTACTTGTAAAACTAAAATGGGGCCACGAATACAAAGGATTACTAGTGTCGGCCGATGGATACATGAACTTGCAACTAGCAAACACTGAGGAAATCGTCGACGGCTCATGTACAGGTAATCTTGGAGAAGTTCTTATTAGGTGTAATAATGTTCTCTATGTAAGAGGCGCCGAGGAAGAAGATG 3 2 5' arm Trichoplusia_ni mirnest 100 100 -22.1 ....((((....(((((((((.((((.(((((.(((..........((((.....))))...............))).))))).))..)).)))))))))......)))). (-22.1)