| mature miRNA: ACTCCCTCCGTTCCATAATAT species: Triticum monococcum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22015692|gb|BQ800723.1|BQ800723 WHE2802_A04_A08ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTACCCAAGACCCTACATATAGTCCTGGGCTTTATTGCGAACTTCAAATGTATCCACTGGCAGCACATGCACAGAAGTAACATAGTTCACATGTTCTACTACTTACTACTCCCTCCGTTCCGAATTACTTGTCGCAGGAATGGGTGTATCTAGATGTATTTTAGTTCTAGATACATTCATTTCTGTGACGAGTAATTTGGAACGGAGGAAGTACTTTCAGTGCGCCATGTTCTTTTGGAGGACGCAAACACCTTACATACGACTCAATAAACCCACTGAAAAACCCAAGAAACACATCCACAGTGGTTGGCTGATCCACTACTTGACAGTTGTGAGTTGTGATCTACATGCATCTTCCCCTGAGCAGCAATGCATATTCATGGCCTGATCTCTAGGCCTCTTCTTCGAGCAGCATCCGATCAAAGTGCCACACCCCGTGCCCTTTGCCGATTCTCCTAAGCTGCGTCACGTACTCGGAGATCTTCTTCACGGCGACAACCTGCTCCTGAAGAAATTGACTCTCAACAAAGTCGCTCAGCT | |||||||||
gi|22017423|gb|BQ802454.1|BQ802454 WHE2826_B02_C04ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGATAAATTGCAGGATAAGAAACTTGAGTTAGAAAAGGAGGCAAATGAACTGATTTCTAAAGGAGCCAAGGTCTTAGTCTCTGTTTTCTCTTATGATGAGGCCGCTAAATTATGTGGAGGTGCTCTGCCTAGCTACATTTCAGAGGGTAGCACTCCCCGCATTGTTAAATTTGGTGACTATCCTGGCTGTCCTTGTGGAGGCACTCATGTAGCCGATATCGCAGACATCGGTAACCTAAAGGTCACAAATATACGAGTCAAGAAAGGTGTGACTAAAGTTTCCTACAGCATCAGCCCATAGTTTTTCTGGGCAACTCTCACACCTACAATTTAGCAGAGGTCAAAGGATAATTATCCAGAGAATCAGAAGGCCGGCTGCATTGGTCTCCTCATAAATTCTATTTTGTGTGACGACACTAAATATATGGAGGGCAAAATAGATAATTACATCTGATATTTCCTCTTAGTGCCACTGTATATGCCCATGTGCAGATCAGATGATCAGGGTATCATGCCCCCTGCTTATTCGTTGAGTTATATGCCCCGACTCTTCATTGTGTTGTCTGTCCTTTACCAGTATCTAGTTGTATGTGATGTTTTGTTATAATATACCCCCTCTGTAAAGTAATGTAGGATGTAATGGAACAGAGGGAGTACTGTATAAGACATATTTGATTATTATGATTAAAAAAAAAAAAAAAAA | |||||||||
gi|13116024|gb|BG314221.1|BG314221 WHE2460_G07_M14ZS Triticum monococcum early reproductive apex cDNA library Triticum monococcu ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): AGTGATTTTACACTCTAAAATTGCCTACGTACATCCGTATGTTGTAGTCCATTTGAAATGTCTAAAAATACTTGTATTTAAGAACGGAGGGAGTATTTGGTTGTGGTAATATAGAATTGAAATAACTTTGTGTTAAAAAAAAAAAAAAAA | |||||||||
gi|13657719|gb|BG607724.1|BG607724 WHE2490_G10_N20ZS Triticum monococcum early reproductive apex cDNA library Triticum monococcu ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): GCACGGGGTGTGGCACTTTGATCGGATGCTGCTCGAAGAAGAAGCCTAGAGATCAGGCCATGAATATGCATTGCTGCTCAGGGGAAGATGCATGTAGATCACAACTCACAACTGTCAAGTAGTGGATCAGCCAACCACTGTGGATGTGTTTCTTGGGTTTTTCAGTGGGTTTATTGAGTCGTATGTAAGGTGTTTGCGTCCTCCAAAAGAACATGGCGCACTGAAAGTACTTCCTCCGTTCCAAATTACTCGTCACAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACACCCATTCCTGCAACAAGTAATTCGGAACGGAGGGAGTAGTAAGTAGTAGAACATGTGAACTATGTTACTTCTGTGCATGTGCTGC | |||||||||
gi|9659942|gb|BE493349.1|BE493349 WHE0571_F10_K19ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA cl ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): GGCACGAGAATTTGGTTTGTGTGTGGTAGCATTCCTCCTAGCTTCATAGTATGGTCTATCTAGCTTGGCTTTTACTCCCTCGGTCCCAAAATAAGTGACACTTATTTTGGGACGGAGGGAGTACTTTAATGAATCTGAAGAAGCGTTATGTTT | |||||||||
gi|22018857|gb|BQ803888.1|BQ803888 WHE2843_C08_F15ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): GCTGATCAATCCTTTCTTTCAGACTCCCGGGCTCCGGCAGAAACAACTTATTTATCATATGCGAGAGCAAGGAATTTATCGTCAGAAGTTTGTATAACTTTGTATTTTTGTTATGGTTCAAAATCTCATGTCTGTAATAAGTGCCCCATCCGTCCCATAATATAAAAGTGTTTTTCACACTACACTAGTGACAAAAACGCTCTTATATTATGGGACGGAGGGA | |||||||||
gi|25443891|gb|CA722098.1|CA722098 wds1c.pk003.e18.f wds1c Triticum monococcum cDNA clone wds1c.pk003.e18.f 3' end, mRNA sequenc ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): ATACGAGCCACTATAGGGCGAAATGGGTACCGGGCCCCCCCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCTAAATGCTCTTATATTAGTTTGGAGTACTATGTATTTATTTTTCCGACAAATATTTTCGGACGGTATGTATTTATTTCTTCGACTATTTTGGGACGGATGGAGTATGTATTTGNGTATGCATGGACGGATGGAGTATGTATTTGNGCATGCACGTGGCAGCGTTCTTAATCTANATTCCCAGTCAGAGCTTGGATGGCGTCCCTCTGGGATGGNGCACCANGATGAGGCCGTAGGCGTCCANTGTGAGGAAGTCGTCCANCTCCGGGGCGACGCANTGCCGGATGAAGACCCTGCCANCCTCCGCGTAGCGCCCCCGGCGGAACCTCNCCGCGCCGATCTCTGNCTGGACCCTCGCCANCTCCTCCTCCAAGANGCGCGGGANCANCTCCGGGGTGGGTCGGACCGCCACNCCCGCCGGGGNCCAACACCGCGCCAAGGGGGGNGCCANTGGCA | |||||||||
gi|22016251|gb|BQ801282.1|BQ801282 WHE2812_E07_J14ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGTGTACCCATTCGACTCACAAAGCATAGACGAGTGCGAAGAAGAGATGGATCCAGCCGAGGGCCGAAGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTGCGATGGTGCCTCACCAACTTCGCCGCGCGCGGCGACGGCGAGCTTGCCCCACCGGACACCATCCTCCTGCTCTACGTCCGGCCCACGCCGCCCACCTACTCCGTGCTCGACGCCTCCGCCCCGCTAGGCTATATGTTTGCCAATGAGGCGACCGCCGCGATCGACGGGTACAGCCGGGCGGTGGCGGACGCGGTGGTGGACAAGGCGCAGAAGCTCTGCGCGCTCCACAGCAAAGAGAACGGCAAGGTGAAGGTGGATGTGAAGGTGGCGGTCGGGGACGCCCGGAGCGTCATCTGCAACATGGTGGACAAGCTGGGAGCCGACCTGCTGGTGATGGGGAGCCATGGCTATGGCTTTCTCAAGAGGGCTCTCCTCGGGAGTGTCAGCGATTACTGCGTCAGGAACGCCAACTGCCCCGTTCTCATCGTCAAGTCGAAATAACAGGGCGAACTGTTCTTGGGAGCGATGTGCTATTTGGCATTTATATCTAATGCAGTGTCAAAAATGTTCTTATATTATGAGACGGAAGGAGTAGTCTTTATTATGCCTTCTATTTTCTTCATTCACTTTTGCTTCTTCATGTGTAACCTGCT | |||||||||
gi|22017988|gb|BQ803019.1|BQ803019 WHE2832_G05_N10ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): CGGCACGAGGATTTCTGCGACGAGTAATTTGGAACGAAGGGAGTATGTGTTATGTATATCTGTTTGGTACCGTTTATAACCTCTGGTAGAGTGCCCGTATTAAGCTTTTGCCCACATTTTCTTTGCTATGGAAAAATAATAATCCGGTGGCATATAACCTCATCATCTGTTTTCGTGTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|31417114|gb|CD492076.1|CD492076 WHE2468_H10_O20ZT Triticum monococcum DV92 early reproductive apex cDNA library Triticum mono ACTCCCTCCGTTCCATAATAT EST sequence (targeted fragment marked with yellow): AGACTAGTTCTCTCCAAAAATAAAATAAAAAACTGAAGGCTTACATAAGTAATTCGGAACGGAGGGAGTACTTAACTAGGATATCATTTGGGTACAACGTGGATGAGAATACGTAATCAGTGATGCAACAACCGTCCAGCTAAAAGAAAACGGGCACAAATTGAATGCCACCATGTTTTTTCCCCATTGCTGCATACTGCCTAAAATTCAAATGCTTAAGCAGTGCAGGTTCCTCGATATCATCCTCAAAGGGCATGCCTAAGACATCCCATTTAGGTCAATCAACTCATACTAGTACACAAATTGCTCATCATATTATTTAGATTGCGTGCATCGCAAGTATGGCCATATTGTGACAGCACAAAGCTAAGATTTATTAGCTCCATGCAAGTTTAGGTCAACTTTCTAACAGGATCAACACTTGGGTCATGGAAATTCTCTTTTCCTGGCAGCACCTTCAGGGCACTAGAATAGCCCCTAGTCCAAGGGCAACTGAGAAAGAGACATTTGTCCTTCTTGCATCCGAACCTCATACTTTCAACAGAAAATAAAGCGTGCACTTTTGCAACTTTAATTCTACACATCTTCTCATGAATGAAGATTATTAAGATCTTATTATCACACGTTTAAGTTATTCGTAATGACTATTCCTGAATGTTATAAACTTACACTACCTGCATTGCCACGAAAGTTCTCATCCAAAGTCTATTAATACGTGTGCTCTACATTAACTTGAGGACTCAACATTGCCGTCCTCGGAGAACTACAATTCTGTGCAACCTACCCT | |||||||||