miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AGCTTATTCAAGAAGGCCAGA
species: Lactuca sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|83979546|gb|DW125655.1|DW125655 CLSX2154.b1_C12.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX2154, mRNA sequence 

AGCTTATTCAAGAAGGCCAGA
|||| ||||||.||.| ||.|
TCGACTAAGTTTTTTCAGTTT

EST sequence (targeted fragment marked with yellow):
TACCTCTCCCATAGCAGATGCGTCTTTGTTCCCTCCGCCTTATAAACCCTACTATAAATCTCACCGCCATGAAGTGAGATGGACGATAGGCGGGTTGAAGAATGATAGTTTTTTCTAAAAAAATCTTGATTTTCTTTCTTATCCTTCCTTTTTCGATATTGCTTCTTAAATAGAGGCTCACACAAATGTGGTATTCCAGAAGTGGTCGATTCGACGATATGATGAAGAAGATAAAGAACCGGATATGTATAGGGCTTCTTAACTCTGTCCTTTTGTCTATTGCTTGCTCTGATAAAACCTAGGTAATTTTTCTTCCACTCTCCCTATCTCTTTTTCCCATGATTCCTCTCTTCTTCTTACCAAGAGAATTGCAAGGTATACGTTTTTCTTAGTTTGAAAAGAAGCCTAATAATAACCCTGAACGACGCAAGAACATTTGTTTGTTCAAGAAATTTTTTGGATTTATCGACATCGGGTTCTAGATTTGGTCCATCTTAATTTCTTGATTTTTTTATTTCCTTTCGATCTGACCTCTCTTTTTATATTTGACGTCTTAATGCTTCCCTCTTCTAATTTCTTGATTTCTTGGACTCTGTTGTTTTTTTTTTTTTTGTAAGTTATTGTCGGAGATTCTCTATGTTGAAGGATAAAGTAATTGTAAGAAGTTATTTTTGATTCTGGCTTAGAAGAGAACGATAAGGAAAGAGCTTCAAAAGGTTCAAAGTTAAAACATATTTGTGTAAGCTTTACTGTCATTGAATTTTGACTTTTTTGAATCAGCTAAAAGGAGTAGCATTG


gi|22252414|gb|BQ866949.1|BQ866949 QGC9G03.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC9G03, mRNA sequence 

AGCTTATTCAAGAAGGCCAGA
 ||| |||||||||||| |.|
ACGATTAAGTTCTTCCGCTTT

EST sequence (targeted fragment marked with yellow):
GGTAATGGAAGTTTCAGCTACAGTCGATTCTTTGCTGTTGGTTTATTTCGCCTTCTTGAATTAGCAAATGCAACAGACCCCACTGTTTTAGAAAAGCTTTGTGCAGCACTTAATATCAACAAAAGAAGTGTTGATAGGGATCTTGATGTATACCGTAATCTCCTCTCAAAGCTTGTTCAAGCGAAAGAGCTTCTAAAAGAATATGTTGCGAGGGAGAAGAAGAAGCAAGCAGAAAGAGCGGAACCTCAAAAGGCTAATGAAGCGGTTAAAAGTTTCTTAGCAGAAAATTACGACACCAGAAAGTAGCGCATATAATAATCGAGCTATAATATTTCCCTTTTTGATCCTTGTTATACCGTTATTTGATGTTTCTTGTTATATTGTGAGAGATGATATAAGCAATCATTATACAAATTCTAACAAAAAAATATGCAATGTGTATGTTGATTTGTATAACTACTTTTGAGAATTCGTGCAACNNNNNAACAC


gi|90515538|gb|DY977396.1|DY977396 CLSS11167.b1_M07.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS11167, mRNA sequen 

AGCTTATTCAAGAAGGCCAGA
 .||||||||||||.| ||.|
CTGAATAAGTTCTTTCAGTTT

EST sequence (targeted fragment marked with yellow):
CGGGGACAGCTATGAAGTCTAGAAAACTGCTTGATTTTTTTTTCTTTAAGGTGAGCGCTCGAATAAGATTAACTAATTGCAATACATACAGACATGGATGATTACACGAAGGACGATGTTTCACAGCTGATCAAGAGAATTGGGGCTTTTCTATCCGCCAGAATGTCCGAAATATTAGATACCCAGGATTTAAGATCTGTTTGGGCTTTAGTGGCTGTTGTTTGTACTATAATTTTTACATGGAGGCTACTCTTAGCACCTAGTGGGCCCCATGGGAGACAACCTAAACCTCAACCTCAACCTCAGCCTTCTTCTCAAGTCAATACTCAACCAAATTCAAATCTCTTGCCTTCATCAACTCAAACTGTAATCGATGACCTTTTTCAACCTGTAAAGCCTACTTTGGGACAAATAGTTAGACAAAGATTAAATGATGGAAGGAAGGTAACATGCCGGTTGCTTGGCATTATACTTGAGGAAAGTACTCCAGAGGAGCTTCAGAATCAAGCAACTGTGAGATCTTCGGTTTTGGAAGTTGTATTGGAGATGACAAAGTTTTGTGACCTTTATCTCATGGAAACCGTTTTAGATGATGAAACCGAAAAAAGGGTTTTAACTGCATTGGAAAATGCGGGCATTTTTACATCAGGTGGCTTGATTAAAGACAAGGTTCTGTTTTGTAGCAAAGAAGTTGGGCGGACTTCTTTCGTTAGACAATTGGAGCCCGATTGGCATATAGACTCANACCGCGAAATTTCTTCTNCATTGGCGAGGTTCATCAAATGTCAACTCCACATTTCACCGCTTAAAACCGAGCAAATTGCTCCAAATGTTTTCACTTCTTCATCTTTGGAACAGTTCTTTGGGGGTTTGACTTTCTTGAATAAGTCAAACGATGCAATATGTACTTTTTTTT


gi|83989061|gb|DW135170.1|DW135170 CLSY2682.b1_D24.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY2682, mRNA sequence 

AGCTTATTCAAGAAGGCCAGA
 ||| |||||||||||| |.|
ACGATTAAGTTCTTCCGCTTT

EST sequence (targeted fragment marked with yellow):
TTCCATTTCCCCAATTTCACTTCTCTCCACTCTCTCTCTGCTAATTCTAGTTTTGAATGGATTCCCTTTTCAATTTATGACCTAATTTCATCTGGTCATCATTCAAATTTCGTAATCCCATCCTGCATTTTTCTTAATAATGGCGGCTATTGCTTCAATTTCTTTCCACGGAGTCACTCAATCATCATCCGAAAGAAAAATCTGTCTCCCATCTCCATCTCCATCTCGCTCCTCTCTTTCAAATTTCGATTCGATTAGGGTTCGTACAACCTTCTCATTTCGTTCCATAAGCGTTCGTCCTTCGAAATCGAGTTCTCGCTTTGCAGTTCACTGCATGTCTACAGGATCAGAAGCACCACCAGTTTCCGAGACAAAATTAAAATTCCTCAAAGCTTACAAACGCCCAATTCCAAGCATCTACAACAGTGTGCTACAAGAACTAATTGTACAACAACATCTAGTGCGATACAAAAAGACCTATAGATATGATCCAGTATTCGCTTTAGGCTTTGTTACTGTTTACGATCAACTCATGGAAGGATACCCAAGTGACGAAGATCGGGAGGCCATCTTCCAATCCTACATCAATGCCCTAAACGAAGACCCACAACAATACAGGGCTGATGCAGAGAGATTGGAAACGTGGGCCCGTGCCCAAAACTCCAGTTCATTGGTTGATTTTTCATCANAATCAGGAGAAATTTAGGACTTGTTGAAGGATATTGCAGAAAGAGCAGGNNGTAATGGAAGTTTCAGCTACAGTCGATTCTTTGCTNGTGGTTATTTCGCCTTCTTGAATTAGCAAATGCAACAGACCCCACTGTTTTAGAAAGCTTTGTGCAGCA