| mature miRNA: AGGGTAATTTTGTCATTTTGG species: Lactuca virosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|84017572|gb|DW154842.1|DW154842 CLVX6905.b1_B24.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVX6905, mRNA sequence AGGGTAATTTTGTCATTTTGG EST sequence (targeted fragment marked with yellow): CGGGGGCGGCTGTAGTTTCATCGAATCCGTAAAAAGGTCAAAATTCCTTCGGAGGATAGCCAGTTCTTCCCCCTTTCAGCCTCCCATATCTTTCTCTCTCTCTTCTCGTCGGGCAAATGCATCTGACAAACTGTGTGATCCCTTCCTACTGAACCTCCAAATTCATCCATGGCGAAACAACATCAACCGTTGATTCGTCTCTGATTCGTTCTCCTCACTCGATCCGTCTCCAGTTTCTTAGATCTGAAAAGCTTTTTTATTTACTATTTATGGAAATGGCTGCAATTTCTTCAAGCCCCCGCACCGTTGAGGAGATCTTCAAGGATTACAGCGCTCGTCGCTCCGGCATCGTCCGAGCTCTCACTTACGACGTCGATGAATTTTACGCAACCTGCGATCCAGAGAAGGAGAATCTGTGTCTATATGGACATCCAAATGAAACATGGGAAGTAACATTGCCAGCAGAAGAAGTCCCTCCAGAACTTCCAGAACCAGCTTTAGGGATTAATTTTGCAAGAGATGGAATGCAAAGAAGAGATTGGCTTTCATTGGTGGCTGTTCATACTGATTCTTGGTTGTTGGCTGTAGCTTTCTACTTTGGTGCTCGTTTGAATAGGAATGAAAGGAAGCGTCTGTTCAGCTTGATAAATGACCTGCCCACTGTGTTTGAAGTCGTAACGGAGCGTAAACATGTGAAAGACAAGCCGAATGTTGACAACGGGAACAAATCCAGATCCAGCACAAAGAGGTCGAATGACGGACAAGTGAAAAGCACACCGAGGGCATATGATGAAAGCTACGCAGAAGATGAAGACGAACACGGTGAAACTCTGTGTGGAAGCTGCGGGGGAAACTACAGTGGGGATGGGTTTTGGATCGGGTGTGACATATGTGAAAGGTGGTATCATGGCAAATGTGTCAAAATTACCCTGCAAAAGCTGAAAGCATTAAGCAGTATAAATGCCCCTTCTTGC | |||||||||
gi|84032602|gb|DW167921.1|DW167921 CLVY6303.b1_N15.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY6303, mRNA sequence AGGGTAATTTTGT-CATTTTGG EST sequence (targeted fragment marked with yellow): GGCGGGGAGCCAATCAACCCCACAAATTAGGGTTCAAGAAATCAAATCCTGCGGTATTCGCTATTCACGTTGATTTCCGAATTTTCTTGTTCATATACATAACAGTAGAAAAGAAAGCATATCTGTCTAAAACAAAGGAAAAGTCAACATCATCTGTGTTCAATTCATACAAAAGAATGTCAGTAACCACCATTACAGCATCCACAAACAGTAGTGTGTGTGGATCTACCAATGCTTCAAGGAGGCACTTGAGACTGAAAAGAAGCCACATAATCTTTGGGACTGTAAAAAGATTCCTTTCACACCAATGTGTACAAAATTACCCTTTCACAAGCCCTTCAGATATATCTGGACAAAGAAATACAAGGGTTGAAGCAGGTTGGTTTTTTAAAGGTGGAGGTGAACAGGGTTCAGATGCGAGTTTAGAGCATAGTGATAGTGCCAATGAGGATATACTCATATTCTTTTACCAGTTGGATTTGGCAGCTAGAGTACAGTATGCATTGAATTTGGAGGAGTATGATATTGCAAAACAGTTGAGAAACAAACTCAATGAGGTTGAAGCTGAAGTGATAAAGCAACAAGAAACAAAGAGGGGATTATCCATAAAAAGTGAAGCTCAAGACAAGGGATTAAGCTTGTTACGCATCCGAGCAGACCTGCAGAAAGCAATTCAGAATGAAAATTATTCATTGGCAGCTGAATTACGTGATCAAATTTCCAAACTTGAGGCTGATTCATTGGCTGCATCAATAAAAGCACAAGCTTTTCAAAATGCTCAATTTGAATTTCGTTTAGGCCAGAAAGTCAGACACAAAAAATTTGGATACANGAGTGTGGGTTGTGGAATGGATCCAGTGTGCTGTGAAAACAAATCATGGATGGAAACTGCAAATGTTG | |||||||||
gi|84033817|gb|DW169136.1|DW169136 CLVY7442.b1_D13.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY7442, mRNA sequence AGGGTAATTTTGTCATTTTGG EST sequence (targeted fragment marked with yellow): GTAGACCACATCACTGTTTCTCAAACTGGAGGACCAGAAATACAAATTGCTAATAGATGAGAGACCGTTGTTTTTTTTTTTCATTCGAATGGTGCGACCAAGCTTCGAATCCGATCACCAACCACCTGTATCGGCCTGAAAGGATTTTCTCGTTCAACAATTTTCAAATTTCTGGGGAACAACAGAAAGAGAAATAGAGTGCGAGTGCAAGAAATAGATATACATCCTTATACAAAATCTAGTATTCAGCAAATGTTCGATCTTGCAAAGTGAGAATTCATCCAAATTAAATGGCGTCGTCGATTCAGGGAAGCGACGGTGGTTGGGTGGAAAGAAAACCGAGACAACTTGGTGGAATTTCCGATGCTCTCTCCATCGCTTCCGACCTCGGTTTCTCTGTTCGATCCCCTCCTTCCAAGAAGTTATCATTTAGCAATGATAAAAAGTGCGAGGACTTTGTAAGACTATTGCACGAACTTACCATGGTACAAAGGAAAATTACAGATCTGCATGTGGAACTTCAAGGTCGAAAGGAAGATATGAATGTCTCACACTTGACGCATGTGAGTGAAATGGAAAAAAAGATACAAACTTTAGCAAGGATCACTCGTATATTGAGAGGTGTTATCCAGAATAAGGATCGTATTTTAGCCCGTCTTCATCAACCATACCCGGTAGATTGCATTCCCGTGGAAGCAGAATATCAGGTTAGACAAAACATAATAGAACAGGTTGTATTGCAGACTCAAAATGAGATTGAAGTTACACAAGACACCCAAAAAGGTAGCACAAGATATGATAGAGATTCTCTCTCCTTTGTGGAAAAAGACAAAATTGCCCTTCTTAGCCCTACAAAATTTGTCTA | |||||||||