miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AGTAGGAGCTGTGCCAAACAG
species: Hordeum vulgare
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|94355632|gb|BY841328.1|BY841328 BY841328 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet57f04 5', mRN

AGTAGGAGCTGTGCCAAACAG
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TCGTCTTCGACGCGGTCTGCC

EST sequence (targeted fragment marked with yellow):
ACACCGCGCCACGCTGATGGCTTCGCCGCCGACGGGGCCCGCGGCGCCGGCGGGTTTAGAGAGCATGGAGGGGCTCGCCCTCGACACTATCATCGCCAAGGCCGGCGCGCGCCCTGCGGCCGCGCTCGCCTGCGCCAGCACGCACCTGCGCGCCGCCGTCGCCGAGGACGCCGTCTGGCGCAGCTTCTGCTCCCGAGACCTCGGCCTCGACGCGCCCCTCGACCCCGAGGACCGCCCGCTCCCCTCTTTCAAGGATGCATATAAAGTTTGGTCAGAGTCTTTTGGTATGTATCCATTACCCCTGGTAAAGAGAGTGAAACTTTTTTGGAGCTCATTAAAAAGCTGGATTTCTGAAAACTTCCCTGAA