| mature miRNA: ATTTCACATAAGTTAAAATTC species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159596472|gb|EY054712.1|EY054712 CATC5033.rev CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): GCACCAAAAAGAAAAATCAAAAATGGCAATCCTTGGTAAGAAATCAATATTATTTTTTTTAGCAACCACTCTTCTTATTTGTTCTTCCTATGCAGATGATCACCTCTTTTCAGCAGGGTTGGAGGAGCGTGCCTTCGCTAGCAAGCTTCTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACTGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTTTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAATGACATGTGTGAGTCTACTTGTTTCAGCTGTACGGGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGATATAAGTTATTGTTGCTGG | |||||||||
gi|159604065|gb|EY050558.1|EY050558 CATC2670.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): ACACCAAAAAGAAAAATCAAAAATGGCAATCCTTGGTAAGAAATCAATATTATTTCTCTTAGCAACCACTCTTCTTATTTGTTCTTCCTATGCAGATGATCACCTCTCTTCAGCAGGGTTGGAGGAGCGTGCCTTCGCTAGCAAGCTTCTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACCGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTCTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAAAGACATGTGTGAGTCTACTTGTTTCAGCTGTACGTGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGATATAAGTTATTGTTGCTATAAAAA | |||||||||
gi|159596473|gb|EY054713.1|EY054713 CATC5033.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): ACACCAAAAAGAAAAATCAAAAATGGCAATCCTTGGTAAGAAATCAATATTATTTCTCTTAGCAACCACTCTTCTTATTTGTTCTTCCTATGCAGATGATCACCTCTCTTCAGCAGGGTTGGAGGAGCGTGCCTTCGCTAGCAAGCTTCTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACTGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTCTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAATGACATGTGTGAGTCTACTTGTTTCAGCTGTACGTGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGATATAAGTTATTGTTGCTGANNNAAAANAA | |||||||||
gi|159773234|gb|EY060095.1|EY060095 CATF11958.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): ACACCAAAAAGAAAAATCAAAAATGGCAATCCTTGGTAAGAAATCAATATTATTTCTCTTAGCAACCACTCTTCTTATTTGTTCTTCCTATGCAGATGATCACCTCTCTTCAGCAGGGTTGGAGGAGCGTGCCTTCGCTAGCAAGCTTCTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACCGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTCTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAAAGACATGTGTGAGTCTACTTGTTTCAGCTGTACGTGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGATATAAGTTATTGTTGCTAT | |||||||||
gi|159773233|gb|EY060094.1|EY060094 CATF11958.rev CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): ACACCAAAAAGAAAAATCAAAAATGGCAATCCTTGGTAAGAAATCAATATTATTTCTCTTAGCAACCACTCTTCTTATTTGTTCTTCCTATGCAGATGATCACCTCTCTTCAGCAGGGTTGGAGGAGCGTGCCTTCGCTAGCAAGCTTCTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACCGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTTTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAAAGACATGTGTGAGTCTACTTGTTTCAGCTGTACGGGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGATATAAGTTATTGTTGCTAT | |||||||||
gi|159618606|gb|EY058149.1|EY058149 CATF10923.rev CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): CTAGCAAGCTTCTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACTGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTTTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAAAGACATGTGTGAGTCTACTTGTTTCAGCTGTACGTGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGACATAAGTTATTGTTGCTAC | |||||||||
gi|159621695|gb|EY085434.1|EY085434 CAZI16869.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI16 ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): CATTTGTACATCTCCATACACAATTAATAGTACAAGAGACCTTCACCATCAATCACGGGGCTTCATTTCACACACAGAGAGAGTCAGATCTTACTTATTCAGCTCATTTTCTTAATCAATCAGCTCGTTTATAATAAGCTTGATTTTGATTTATTTGAAATAAGTTAGTAATTAGTAGAAAGATTGGATTTATGTTGTTATTAATGGAAGATTCCAAGTTGTATTCAGGTTCCTTATTGATGCAACATTCTTCGTCCTCTTTTGACGGTGGTGGTGGTTCCAGTGTCGGTAATGGTTATTCGAGTGTCGGCAATGGTTGTTCGAGTGTCGGTAATGGGTTTAGAAGTGTCGGTGGTTCGAATGGTGGTGGTGGTATTGAGCATATTGTTACTAGATTTGATACGCTTGCCGGTGTTGCTATTAAATATGGTGTTGAGGTGGCTGACATCAAGAGGATGAATGGCCTAACTTCCGATTTACAGATGTTTTCTCGCAAGTCGCTGCGAATACCCTCACCAGGGAGGTTTCCACCGTCTCCCGTTGTTTCAAATGGATGCCATACTCAAGGGCAAACCAGCTCAGAGATGACTCATCCAAGCAGTAGATATTCTGATTCATTTAGTCCAATTAGATCATTAANATTATCAGCCTCGCCCCAGCGGAACATTTCATCATCTATCAATTCTTTACGAGACTATTATGGTCTTGCGGCAAATGATCAAAATGGTGTTGGT | |||||||||
gi|159604064|gb|EY050557.1|EY050557 CATC2670.rev CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): TTATTTGTTCTTCCTATGCAGATGATCACCTCTCTTCAGCAGGGTTGGAGGAGCGTGCCTTCGCTAGCAAGCTTTTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACCGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTTTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAAAGACATGTGTGAGTCTACTTGTTTCAGCTGTACGGGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGATATAAGTTATTGTTGCTNT | |||||||||
gi|159721575|gb|EY065963.1|EY065963 CATF9096.rev CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDN ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): ACACCAAAAAGAAAAATCAAAAATGGCAATCCTTGGTAAGAAATCAATATTATTTCTCTTAGCAACCACTCTTCTTATTTGTTCTTCCTATGCAGATGATCACCTCTCTTCAGCAGGGTTGGAGGAGCGTGCCTTCGCTAGCAAGCTTCTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACCGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTCTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAAAGACATGTGTGAGTCTACTTGTTTCAGCTGTACGGGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGATATAAGTTATTGTTGCGGC | |||||||||
gi|159721576|gb|EY065964.1|EY065964 CATF9096.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDN ATTTCACATAAGTTAAAATTC EST sequence (targeted fragment marked with yellow): ACACCAAAAAGAAAAATCAAAAATGGCAATCCTTGGTAAGAAATCAATATTATTTCTCTTAGCAACCACTCTTCTTATTTGTTCTTCCTATGCAGATGATCACCTCTCTTCAGCAGGGTTGGAGGAGCGTGCCTTCGCTAGCAAGCTTCTTCAGATGATTGCTCGACCGATAAAGTCCGAGTGGCCTAAACGCACAAAGAAGGTTTTGGAGTTCTTTAAGGAATTAGACGGCGGTATAAGTACCTTATGTACAAGAAGGTACTGCAAACCCAATCAAAGTTGTCCTGGAACCTTATGCGTTTACAAATTGGTGACTAACAAACCGATCAACTGCCAAAAAGACTGTAACGAAGAACGATCACTTAAAATACCATGTTATTATGATTATAGTTCTGGTAAAGTTACCGGACACTGTTAAATGAGAGTCTGATGAGTGCATTCCACTTTCATACTACGTATAACCTATGTAATGTAATAAAGACATGTGTGAGTCTACTTGTTTCAGCTGTACGTGTATTTGATATTTCCTTCATAATGTAAGTTGATCTCGATTTGAGGTTTGATTTATGTGATATAAGTTATTGTTGCTGC | |||||||||