miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATTTGTCACATATAATGCACT
species: Actinidia deliciosa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|195258330|gb|FG476018.1|FG476018 020906KALA010837HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme 

ATTTGTCACATATAATGCACT
 |||||||||| ||||.|| |
AAAACAGTGTACATTATGTCA

EST sequence (targeted fragment marked with yellow):
CTCATTTTTGCTTTTTTCTTGCCATGTTTGTTTTTCCAATTACGATGGTTCGGAGTCATTCAACTGTATTACATGTGACAAAAGGTGGAGCCGCAGCAAGAGACGGGTAATTTTTATTAAGTTGTATATTAGAGAGAGAGAGAGAAAGAAGATAGTGCCCTGGATTTTGTTCTATGGTCAATCTCGAGCAGTTGCCATTTGATTGGCCAAAAAAAAAAAA


gi|195222614|gb|FG406373.1|FG406373 000725KAAA004212HT (KAAA) A. deliciosa developing shoot buds Actinidia deliciosa cDNA clone 

ATTTGTCACATATAATGCACT
|||||||| ||| ||||| |.
TAAACAGTATATTTTACGCGG

EST sequence (targeted fragment marked with yellow):
CTCTCTTTCAGATCCTTTTGGCCCCTCATTATAATTCTTCAGATCTCCGTTTCTGTATCGTTTTGCTGTTTCTAGGACCACATTTTGCGATTCTGATTCATGGCCGGCCGTTACGATTCCAATCCTTTCGAGGAAGAAGAAGTGAACCCATTTGCAGAGCAATCAGGTCGAGGGAAAGGTTCAGGTCAATCAAACTATGGTGGAGGCGCATTTTATATGACAAATCCTGGAAGTGTTGCCCCTGCTGCAACCTCAAGGCTTTCCCCACTTCCTCCTGAACCTGCTGACTATGATCATGGCACCACAGGTGATATACCTCTTGATAGTGCAAAGGAT