| mature miRNA: CAAGGGTCTCGTCCTCAAGGA species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218801254|gb|FC923691.1|FC923691 C31707H09EF StrClemenN Citrus clementina cDNA clone C31707H09, mRNA sequence CAAGGGTCTCGTCCTCAAGGA EST sequence (targeted fragment marked with yellow): GATCCTCGAGTTGCTTGCTTTGCATGTGTGATTGAGGGTGCTTGGCCTCTTTTAAGGAATTGAGCTAGGGTTTCATAGTATCTTCTTTGAGATCGAGGCCCTTGCTTGATTTTCTGCTCAAATTTCGTTGTTGAGTGTTCAAAATTCATTTTTTGTTTGCTAAGAAAATGGCCATAATGTTCGATCACCATCAATGGGGAGTTGCATTTGGCATCTTAGGTAACATTATCTCGTTCCTCGTGTACCTGGCTCCGGTGCCAACATTTTACCGAATTTACAGAAAAAAATCAACAGAGAGCTTCCAGTCTCTGCCTTATCTGGTAGCATTGTTCAGCTCAATGCTGTGGTTCTACTATGCGCTTGTGAAACAAAATGCTTTCCTTCTCGTTACCATCAACTACTTTGGATGTGTCATTGAGACTATTTACATCATCCTCTTCATCACTTATGCCCCAAAAGGCAGCCGGAACTCAACTGTCAAACTATTTGTTTCGATGAACGTTGGAGTGTTCTCTTTGATTCTTCTTCTCACACACTTTCTTGCAACCGATTCAACTCGGATCCTAATTCTTGGTTGGATTTGTGTTGCCGTTTCTGTTAGTGTCTTCGCAGCACCCTTAAGCATTGTTGCACAAGTTATCCGAACAAAAAGTGTTGAGTTCATGCCATTCATCCTATCATTTTTTCTTACGCTGAGTGCAATTATGTGGTTCGCTTACGGTCTTTTTC | |||||||||
gi|218827873|gb|FC895933.1|FC895933 KN0AAQ11YH17RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ11YH17, mRNA sequence CAAGGGTCTCGTCCTCAAGGA EST sequence (targeted fragment marked with yellow): CCAAAACCTTACTGAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGATCCCCAAAGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCGTTGGCTTCTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAACTCTCATGAACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTGTTGCTCCAAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGTTGGATCAGGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGTCTAATCTAAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTAGGCCATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTTTGTTGGCATGGGAGCAACACTACTTGATGGTGTTGTTGTTGAGAGACATGGCATGGTTGCTGCTGGATCTCTTGTGAGGCANAATACCAGGATCCCTTCTGGAGAGGTATGGGGAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGATGAAGAAATAGCCTTTATTTCCCAGTCAGCCACCAATTATTCCAACTTGG | |||||||||
gi|218836381|gb|FC920602.1|FC920602 C32010F02EF RVDevelop1 Citrus clementina cDNA clone C32010F02, mRNA sequence CAAGGGTCTCGTCCTCAAGGA EST sequence (targeted fragment marked with yellow): GATCCTCGAGTTGCTTGCTTTGCATGTGTGATTGAGGGTGCTTGGCCTCTTTTAAGAAATTGAGCTAGGGTTTCATAGTATCTTCTTTGAGATCGAGGCCCTTGCTTGATTTTCTGCTCAAATTTCGTTGTTGAGTGTTCAAAATTCATTTTTTGTTTGCTAAGAAAATGGCCATAATGTTCGATCACCATCAATGGGGAGTTGCATTTGGCATCTTAGGTAACATTATCTCGTTCCTCGTGTACCTGGCTCCGGTGCCAACATTTTACCGAATTTACAGAAAAAAATCAACAGAGAGCTTCCAGTCTCTGCCTTATCTGGTAGCATTGTTCAGCTCAATGCTGTGGTTCTACTATGCGCTTGTGAAACAAAATGCTTTCCTTCTCGTTACCATCAACTGCTTTGGATGTGTCATTGAGACTATTTACATCATCCTCTTCATCACTTATGCCCCAAAAGGCAGCCGGAACTCAACTGTCAAACTATTTGTTTCGATGAACGTTGGAGTGTTCTCTTTGATTCTTCTTCTCACACACTTTCTTGCAACCGATTCAACTCGGATCCTAATTCTTGGTTGGATTTGTGTTGCCGTTTCTGTTAGTGTCTTCGCAGCACCCTTAAGCATTGTTGCACAAGTTATCCGAAACAAAAGTGTTGAGTTCATGCCATTCATCCTATCATTTTTTCTTACGCTGAGTGCAATTATGTGGTTCGCTTACGGTCTTTTTCAGAAGACATATGCGTT | |||||||||
gi|218837868|gb|FC906241.1|FC906241 IC0AAA65BA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65BA01, mRNA sequence CAAGGGTCTCGTCCTCAAGGA EST sequence (targeted fragment marked with yellow): CAAAACCTCACTGAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGATCCCCAAAGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCGTTGGCTTCTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAACTCTGATGAACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTGTTGCTCCAAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGTTGGATCAGGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGTCTAATCTAAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTAGGTGAGTGGTCTCATATTGGTCATTTACTTTATAAGCGCCAGCTGACGTAGGTCCTTCCATTTTCTGGATTATGATTAGTATTTGAACCGAGCAGGCCATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTTTGTTGGCATGGGAGCAACACTACTTGATGGTGTTGTTGTTGAGAGACATGGCATGGTTGCTGCTGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCTGGAGAGGTATGGGGAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGATGAAGAAATAGCCTTTATTTCCCAGTCAGCCACCAATTATTCCAACTTGGCACAAGTTCATGCAGCTGAGAATGCGAAGTCCTTCGATGAGATTGAATTTGAGNAAGTTCT | |||||||||
gi|218810553|gb|FC886427.1|FC886427 IC0AAA75AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA75AH09, mRNA sequence CAAGGGTCTCGTCCTCAAGGA EST sequence (targeted fragment marked with yellow): TCAGTCATCACACACACAACACACCTCGCTCAAACTTAAGAAACCCAAAACCTCACTGAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGATCCCCAAAGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCGTTGGCTTCTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAACTCTCATGAACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTGTTGCTCCAAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGTTGGATCAGGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGTCTAATCTAAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTAGGCCATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTTTGTTGGCATGGGAGCAACACTATTTGATGGTGTTGTTGTTGAGAGACATGGCATGGTTGCTGCTGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCTGGAGAGGTATGGGGAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGATGAAGAAATAGCCTTTATTTCTCAGTCAGCCACCAATTATTCCAACTTGGCACAAGTTCATGCAGCTGAGAATGCGAAGTCCTTCGATGAGATTGAATTTGAGAAAGTTCTTCGCAAGAAGTTTGCACGTCGGGATGAGGAATACGACTCAATGCTCGGTGTTTGTCGTGAAACTCCTCAAGAAATTATTGTTCCTGATAGCATC | |||||||||