| mature miRNA: CAGAAGAGAGTGAGCAC species: Nicotiana langsdorffii x Nicotiana sanderae database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|94462501|gb|EB698376.1|EB698376 NecGex_347A08 Ornamental tobacco (LxS8) post-fertilization Floral nectary cDNA library Nicoti CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGTCTGATATTTCATTATCCAATTATATAGAGTACAGTTTATTTTTTATTTTAACTTTAATAAATAAGAAAAAAAATTGGTTGCTTCTTCACTCTCTTGTGATTTCCTTTGTTTTGCAGATACCGCAAATTTTTGGTTATCATTCTCCGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGAGAGAAGTACCCTGATAGAATCCCGGTTATTGTGGAGAAGGCTGAAAGAAGTGATATCCCTGACATTGACAAGAAAAAGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGTAAGAGGATTAAGCTCAGTGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGGTGAGGAGAAACATTCTAAAGTAATACTTAACCGTTATTATGCTTTTACCAATTTGTTTTCTGATTGTTTATCCACTTTGTTACAGCTGCAATGATGTCTGCCATTTATGAGGAACACAAGGGATGAGGATGGGTTCCTCTACATGACCTACAGTGGCGAGAATACTTTCGGATCCTTCTGAAGACGTAAGAAACCGTACTGTGTAAATAAGTTCAAGAAAACATGTAAATACTTTATTTTAGCTAGTGTCTGGAATTGTCCTTCTACCGAGGTGCTATCTTGGGTCGACATTNGACTGGNTTGTGTATCCTACTTTANTAAAAANGTTCGNTTTNCCA | |||||||||
gi|94453028|gb|EB688903.1|EB688903 NecGex_109G03 Ornamental tobacco (LxS8) Stage 6 Floral nectary cDNA library Nicotiana langsdo CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGCCAAAAGAGATGGGCTGCTGCCTTGCTTGACGACGAGTTAATACTTTCTCTCCCATTTTTATCTCAATTTACTTTATTGTTTGCTTGGCTGAATAGGTGATGGTATATCTTAGGCAGATGACATCTACAATATGTGGGCATTCCTAGGTGAACACTCCCTGCAACTGCATCTGTTGTTGCTTGGTTTTGAATGTTTGTTCACTAGACAGAATTCTATCATTTTGAAAAAGATTGCACAGTTAAGAGAAGTCCTAAATAACAACAAATGTATTAACTCTATTCTGTCCNAAAAAAAA | |||||||||
gi|94453472|gb|EB689347.1|EB689347 NecGex_120F11 Ornamental tobacco (LxS8) Stage 6 Floral nectary cDNA library Nicotiana langsdo CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ATTCAATAAATCCAAATTCCTCAGTCTTTTTCTCTCCTCTTAGTAATAAGCCAAAGCGTCATTCCCATAGCTTCCTTTTAATTACTTCCACCGTTCTTCACTCCTTCTACTCATTTTTCCTTTCAAATTTTCCCAAAACAAAATCAGTGAACTTTTCTATCGTTGAAAAGAGCTTGTATTCATTGCTTTTCAAATGGATACTTTCGATTTCGGTAGTGAGAAAATAGAAAACAGAGTGATTCTGATATTCCACAGTTTCAAAAGCGTTGCGAAGCTTTTTCGCATCGTTGAGTTCTGTGTTGGAGTTTTTGTGCTCTTATGGAGTTCTACTCGATTACCTTTTGCCGTCAAAATTTCCGGCGAGTATTTCCGGCAACTTATATCCATAATACTTAGCCCTCTCTTCATTTTCCTTATTTGCAACGTCATCGTCCTCACTCTCCTCTTCAAGTCCGGCCGACTCTTCGGAGATCCCNCCTCAACACTCTGTGCTAGCACCGAAGCCGAACTCTACGACTCTTTCATCGAAAANGAANATNGCTCCGGNATTTTANCCCCCGGTAACCCGNCTTCCCCGCCGGAAC | |||||||||
gi|94458642|gb|EB694517.1|EB694517 NecGex_053F08 Ornamental tobacco (LxS8) Stage 12 Floral nectary cDNA library Nicotiana langsd CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): ATCCCAGTTTGTTTTGGTTTCAATTGCGCTTCTAATTTCTCCCTGTACAGCGGGATGTAGGGTTTCCAGTGAGCAATATCTTTTCTGCTCACTCTTTTTTCTTCCCCTTTTGGAGGGATAAAGTAGTAAAGGAAAAATCAAACAAAGCAACCACCCATATGCAAGAAGTGTACCTGATGTCCAATACATTAAAGAAGCTTCTGCTGACCATCTTCCTGGTTGATGCATCACATATATCTTCTAACAAATAAAGTAATCCTGTTTTGGGCTGGAGATGTAACTTCTTTGACATTTTAGCTGCTGTGCATTTTCAGATTAGCATTTTACCAGCTGAAGTCATATTTGCACTAACTAGCCAGCTCCCAGAAGTTGCTTACTTCACGTGAAGTCACACTGGAAAACAATACATTCTCCTGTGAATGTTTCATTATAGTCCGGGGACTCTGCTTTTCAATATCTGCTGGCTTTTCTTTGGAGGAACTGTCATATCATATCTGCTATTTTTGCCTGAACGATTTGGGTCCTAGATGGGCAGGGTAAAGCCTATGGCTTGTTTAGGAAATTTGAAGTGCATTCCATGTTAGGTTGGGTTTGTTAGTGCAACTGGTGTTTGAATAATCATTTCTCTCACGA | |||||||||
gi|94461550|gb|EB697425.1|EB697425 NecGex_331C04 Ornamental tobacco (LxS8) post-fertilization Floral nectary cDNA library Nicoti CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGACGTCATAGAATTCTACCAACTCTTTTACGGCACCGAGGGAAGCTCAGACGGAAAGGTCAAAGATGGGTATTGAAGGAGGAAACCTGAGTTCAGAGCAGCTTCATTTCTTCGACACTAATGGGTATTTGGTGTTAGAATCATTTGCAAACCCAGCAGAGATTGAGTCCCTTAGGAAGAGAATGGAACAGCTGCTTGATGAGTTTGATTGCTCTTCCACTGCTTCTATTTTCTCTACCAAGAACCAACAACAAACGACTAATGACCACTTTTTTGAAAGTGCTGAGAAGATTTCATTCTTCTGGGAAGAGAAAGCATTTGATGAAGATGGCAACTTAAAGCAGCCAAAGGAACTCTCAATAAATAAAGTTGGTCATGCTCTTCATGAGAAAGATCCTGTATTTAATAAGTTCTCTAGCTCGGACAAAGTCTCAGGCATGCTGCGGTCATTAGGTTACCAAAGGCCAGCAGTCATTCAGTCAATGTACATATTCGAGCAACCAGGTATTNGGGGGGNGAAGTAGTGCCGCACCAGGGATAACTCTTTTCTGTACACCGAACCAACAACGTGCACTGGCTTGTGGCTGGCTTTAGAGGAAGCAACAATTGTAAATGGCTGTCTCTGGGCTATACCGGGGTCCCACAAAAATGGCCTTGTGAGGAGATCCTTAGAGATGAAAATGGGGGTCACTTTGATAAGCCATCTCCATGNTATAACCAGAAAGATTTCGTTCCGCTTGNAGTAAAAGCTGGNTCTTTGGTA | |||||||||
gi|94458458|gb|EB694333.1|EB694333 NecGex_051C02 Ornamental tobacco (LxS8) Stage 12 Floral nectary cDNA library Nicotiana langsd CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): CAACCTATGAACTTTAGACCAGCTCCAAATCCTGTAGGTTCTTTCTCTCCTAGAGTAGGAAACCCAATGCCTCTTCAGCAAAATAATCCAACTGCCATGCTTCGACCACAAAATTTTGAGGCTCCCAACAATGTCTTCTTTCGACACAGTAGGCCTGCCTCCAGCTCCTCTGGAGCACATCAAATATATGACCCCTTCTCACCCTCTTCTGTCCCTCGTCGTCC | |||||||||
gi|94462701|gb|EB698576.1|EB698576 NecGex_350F05 Ornamental tobacco (LxS8) post-fertilization Floral nectary cDNA library Nicoti CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGATGGTGGAACTATTAGATGAAGAGTTTTCACTGTCTTCTTCATCATCTTCTGCTTCGAGTTGTTCATCAGACGATGAATCAGGCTCGAGTAGAAATACTGTGCTGGGGCGATTTTCTTCAGCTAGAAGGTCCGAAGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATTCAAGCTCTTGCACATCGTGCTAATTCGATTTGGGTCATGGATGCGGATCATAATTTGATTGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATTGCTAATGCGAGGCGTAAACCAGAAAGGGAGAATACATCAAAACAATAATAAACAGCATATTGCCATATCAGTTGTGTTAAATTTCTTTTAAATGGGACTATGTTTTGCATAAATTTTGCTTGAATGAACAAAAGGCTTATTGGTGGTGACCC | |||||||||
gi|94460487|gb|EB696362.1|EB696362 NecGex_311E01 Ornamental tobacco (LxS8) post-fertilization Floral nectary cDNA library Nicoti CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGAATAAACAAGAAAAAAATTGGTTGCTTCTTCACTCTCTTGTGATTTCCTTTGTTTTGCAGATACCGCAAATTTTTGGTTATCATTCTCCGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGAGAGAAGTACCCTGATAGAATCCCGGTTATTGTGGAGAAGGCTGAAAGAAGTGATATCCCTGACATTGACAAGAAAAAGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGTAAGAGGATTAAGCTCAGTGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGCTGCAATGATGTCTGCCATTTATGAGGAACACAAGGATGAGGATGGGTTCCTCTACATGACCTACAGTGGCGAGAATACTTTCGGATCCTTCTGAAGACGTAAGAAACCGTACTGTGTAAATAAGTTCAAGAAAACATGTAAATACTTTATTTTAGCTAGTGTCTGGAATTGTCTTTCTACCGAGGTGCTATCTTGGGTCGACATTGACTGGTTNGTGTATCCTACTTTATTAAGATGTTCGNTTTCCANTTTGCTAAGTTGGNGTCCGCANTTNGNGNTTCCCNTAACNTGGNCCCAAAAAAAGTTTGGAAGACCTACTTATCNNCCTTTTNCAAANNAAGGAAGGGNAANNGGGCNTAANCTGGTCGCCCGCC | |||||||||
gi|94453592|gb|EB689467.1|EB689467 NecGex_124A03 Ornamental tobacco (LxS8) Stage 6 Floral nectary cDNA library Nicotiana langsdo CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGATGCATCAATGACTCAAATGTTGAGTGCATTGTCAGGTGGAAAATTGCTTGTTATTCTTGAGGGCGGCTACAATCTTCGTTCAATTTCATCATCAGCTACAGCGGTGATTAAGGTCTTGCTTGGTGAAGGTCCTGTGATTGACCTAGACAATACTGTACCTTCCAAATCTGGATTGCGAAGTGTTATGGATGTTTTAAAGATTCAGATGAACTATTGGCCTACATTGGAGACAAACTTCACCAAATTGCAGTCAAAATGGGGACACTACGTTTTTCAGGACACAATAAAACAGGGTAAGCGGAGACGCAGGACTGGTGTACCAATATGGTGGCGATGGGGACGGAAGAGGTGGTTGTATCAGATACTATCCAAGCAGCTGCGTGCAAAATCCTGTTGTAACTATTCTTGTGGATGTTGACTCTCTTTTGTAATCTACATACATTAGGTCTTTAGACTATGCTGCTGTTTTGTAGTTGAGAGAAACTAGCGCCCCCTAATGTTCTTTTTTTGGTCATTATGCTTCGACCTCTCCATCGCTCCCTGGACTGAATTGGAATAGTAGTTTCAATTTGTAGTGGTCTAATTCTAGTACTGCCTAATTTTCTAATTTACTAGCATGTTTATGAATGACTATGGTTCCNAAGAACTTGCAGTATTCAACAAACGAGCAGAAAAATGGTTACNTCTCAAAAAAAAA | |||||||||
gi|94461865|gb|EB697740.1|EB697740 NecGex_336D08 Ornamental tobacco (LxS8) post-fertilization Floral nectary cDNA library Nicoti CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GAGGAAGAAAAAAATTGGTTGCTTCTTCACTCTCTTGTGATTTCCTTTGTTTTGCAGATACCGCAAATTTTTGGTTATCATTCTCCGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGAGAGAAGTACCCTGATAGAATCCCGGTTATTGTGGAGAAGGCTGAAAGAAGTGATATCCCTGACATTGACAAGAAAAAGTATTTGGTTCCCGCGGATCTGACTGTTGGACAATTTGTGTATGTTGTTCGTAAGAGGATTAAGCTCAGTGCTGAGAAGGCCATTTTTATCTTTGTGAAGAATATCCTCCCCCCTACAGCTGCAATGATGTCTGCCATTTATGAGGAACACAAGGGATGAGGATGGGTTCCTCTACATGACCTACAGTGGGCGAGAATACNTTTCGGATCCNTTCTGAAGACGTAAGAAACCGGTACTGTGTAAATANGTTAAAGAAAAAATGTAAATACTTTTATTTTAGGCTAGNGGCTGGGAATTGNCCTTTCTNCCGAGGGGCTTTCTTGGGGGNCNAAATTGACNGGGTTNNGGAATCCTACTTTTTTAAGAAGGTTCCGNTTTCCATTTG | |||||||||
gi|94460406|gb|EB696281.1|EB696281 NecGex_309H12 Ornamental tobacco (LxS8) post-fertilization Floral nectary cDNA library Nicoti CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGATCCTTGGTTTGTGTCCCTCTCTCTCTCATGTCATGCTAATATTTAAATTCTTGCTGTGGGACTTTTATCANNTAATATTTTCNTTTTTAAAAAATGTTTAATTTCTTACTCTCTTTTGGAATAGGATTGGAGTTTCTNTGAAGGAACAAAGGGATGTTTCCAGCAACGAACAATCTCAGCACTACTCTATATGGCTCTCAATTGGACTAGAGCNAATATATCGTACCTCAGNTTCCTATGCTTTATCACCTNTTTACCAGCGGGNAGAAAATTATACCGCCCTTCT | |||||||||
gi|94463966|gb|EB699841.1|EB699841 NecGex_414F02 Ornamental tobacco (LxS8) leaf cDNA library Nicotiana langsdorffii x Nicotiana CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGATTGGGAAATCTTGGAGATGAAAAAAATGCAGAATTACAAGAGAAATTGAGAAATGAAGTGAGAGAGAAAGTTGGATTAAAGCCAGAAAATTTGAGTTTTGAGAGTGTTAAAGAAATGGAACTTGTTCAATCTTTTGTATATGAAACACTTAGACTTAGTCCACCTGTGCCAAGTCAATATGCAAGAGCAAGAAAAGATTTTAAGCTAAGTTCACATGATTCAGTATATGAAATCAAGAAAGGTGAACTTCTTTGTGGATATCAACCATTGGTAATGAGAGATCCAAAGGTGTTTGATAATCCTGAAAAGTTTGTGTTGGAAAGGTTTACAAAGGAAAAAGGGAAAGAATTGCTGAATTATTTGTTTTGGTCAAATGGACCACAGACTGGGAGACCAACTGAATCAAACAAACAATGTGCTGCTAAAGATGTTGTTACTCTTACTGCTTCTTTGATTGTGGCTTATATTTTTCAAAGGTATGATTCAGTGAGTTTCTCTTCTGGTTCACTCACTTCTGTGAAAAAAGCTAGTTGAGTTTTGAGTTGTGGCAGCTAATTAAGCTTGCTAGACATGATCAAAATAATGTCTTCAGATGTCTTTTTTTCCTCCTCCTCCTTGTGTGATACTCCTTATGTAATATAAATTTAAGAATG | |||||||||
gi|94461983|gb|EB697858.1|EB697858 NecGex_338D02 Ornamental tobacco (LxS8) post-fertilization Floral nectary cDNA library Nicoti CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGGGGAATCAGTTTGCAAGTATTTGTCAGAAATGATTTCATTCATGGTTGTGGCGATTGATAGGCGATGGACACGGCAAATTGGCCAAGGCAACGCTAACTGAGGCGTGTTGCACGCGGATTTGACACTGACTCTTGACATGACCGCTCCACCCCATATAATTTCTCACTTTCTTCTTTTTACTATACGTACTTTAGCAGGTAATTCAACGCACTTTAATTTAATGAGTTATTGTGAGTTCGGATTTAATATTTGTTAACATTTGCTGAATTTTCAAATGTATATATTACTTCACATTTAAATTACACATTAAAATTACTGGATTCGATTGAATCCATTACCAAAAAAAAA | |||||||||
gi|94457316|gb|EB693191.1|EB693191 NecGex_030B08 Ornamental tobacco (LxS8) Stage 12 Floral nectary cDNA library Nicotiana langsd CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): TTGGCACTCTGACAAATACCCTAAATTCTTTGTATTCCTTTCATTAGTCTGCCTTGAACTGCTTTTTCCTGGATTTTGTTGTTGGAGTACTTAAAATATTTTCTCACAAAATCTCTGGTTTGTTGGGTTAAAAGAGGGTTTAAAAGGGGTTGAATCCTGCTGTTTGATTTGTTGCTTGGCTCCTGCTTTGCTATTGTTGAAATCCTCACTCTCTTTTGCTTTATTTTAACATACAGGTATTTCTTGGACTTTGAATGATATGGGAAGTGCAAATCTGAAATATGTAGTCAAGTGTGGAGATTTAAGGATAAATGTTAGCTTGATGAATGTTATTCATGTGTTCTTTAAAGTTTATCTAGTTTCTGTATTAAGTTAGCTTTACTTTATGTGTTCCTTTGCTTATTCACGTTATTGATGTTATATCTCATTTTCAAGGTTGGATTAGGACTTTAGCTTATTATGGTTGTTTGTGATTTGGCTAAAAATCCTTTTGTTGAAGTATAAAGTGCTTAAACTTTCTGTAGTATGGATCTACGTCAGATGATGAGCATCTTCTATTTACTTTGTTTAGGTCAGTGTTGATTTTCAGTTCAGGGTCAATTCATATCATAATTTTGCTGGTTTAGTTACTGATCTTGAGCATTTGAATTCGTTTAAGAGTCATAATTTGAGCAAAAAGTTGTTTGTTTGACAATTTCCATTGTATATGTGCAAATTTAAACTGTTTGGAGTTTCAGCATTGCTAGAACAATTATATGTGCGAATTCAGCATAACTAGGGGATAGTTTCAAATTTTCAGATGTATATGGCTGGCAGTAATAGTAGAACACTTGGNGT | |||||||||
gi|94461130|gb|EB697005.1|EB697005 NecGex_324A09 Ornamental tobacco (LxS8) post-fertilization Floral nectary cDNA library Nicoti CAGAAGAGAGTGAGCAC EST sequence (targeted fragment marked with yellow): GGGGAAGAAAAAAATTGGTTGCTTCTTCACTCTCTTGTGATTTCCTTTGTTTTGCAGATACCGCAAATTTTTGGTTATCATTCTCCGATCACCATGGCCAAAAGCTCCTTCAAATTGGAACACCCTCTTGAGAGGCGACAGGCTGAAGCTGCTCGTATCAGAGAGAAGTACCCTGATAGAATCCCGGTTATTGTGGAGAAGGCTGAAAGAAGTGATATCCCTGACATTGACAAGAAAAAGTATTTGGTTCCCGCGGATCTGACTGTAGGACAATTTGTGTATGTTGTTGCG | |||||||||