| mature miRNA: CAGCCCTTCTGCTATCCACAT species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|138286556|gb|ES248077.1|ES248077 WS0367.C21_K23 SS-B-N-21 Picea sitchensis cDNA clone WS0367_K23 3', mRNA sequence CAGCCCTTCTGCTATCCACAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGCAGTAAAAATGGACGGGTTTTCTATTAAAGGAAAACAGCAATAAATTGACCACTGGGCCAAATACATTTTGCCTGGCTCTATCTGAGAATCCTAAAACGATATGTCGCAGGACCTCACTCCGGCCTAAAAACCCATGGGAGGGTTTCGGTTAAAGAAAAAAGACAATAAATTGAAATGCTTGTGACCCAAAATAAAAGCGAGATCATACCTGGAGGGTTTCTCGAATTGGGTGCAGAGAACAGAGGTCAGAAAACTCCCATCGGTTAAGCAAGAAGGATTCTAAAACATTTTTCAAAATTTCAAATCAGATCCAAAGGATTTGAGCATTTGAAATACTTTGAGAACATAAATAATATACCGAGTCTTTTACGGGACAGGAAACTTTTGAGCCTTGGTCCATAATTTTTTATTGCCGTCGAAGAAATTGATGTGAGCAAACTAGTACTGTTGTGGATAGCAGAAGGGCTGGTAAAGAAAAAACAGGCAACCCATTTAATGAGTATTGCCATTAAAATGCACTGCTCGAACACAGTCGCTTGATCTCGAACAGCCAACATCTTGCAATAAAATGCCTCTCATGGAATCTCTATTAGATGGGCTTCGTACTGTTTACTAACTAACCCTTCTATATCCACATCTGTACACTCTGAACGCATCAATTTCTTCATACTGCAAGAAAACAGCTCCCCATCCCTGCAAAATTTGCCATGGTGCCATCGATTGGTGATCAAAACGATAAGGCTCGGTTCATGAGGATAAGGGCAGAATGAGGGATATGATATCCTGAATAAACACCCGTTACCAACAATGCATCCATAAATCTACCATTTATGCATTCACACGGGATGGACA | |||||||||
gi|149964034|gb|ES864062.1|ES864062 WS027101.CR_N15 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS027101_N15 3', mRNA sequence CAGCCCTTCTGCTATCCACAT EST sequence (targeted fragment marked with yellow): AAGAGCTCTTTTTTTTTTTTTTTTCTAAAACATATTTCAAATTTCAAATCAGACTAAGCATTTTAACCATCTGAAATATTTTGGCAATACAAATAGTATAGCCGAGTCATTTATGGGACAGGAAACTTTGATGCCCTCTTCCATATTTTTTTGCTGAGACTACAGATTGCCTTCAAAGAAATTGATGTGGACAAATTAGTACGAATGTGGATAGCAGAAGGGCTGGTAAAGAGCAAAAGGTAACCCAATGAGCATGGCCATCTAAATACAGCTGCTGGTACACAGTTGCTTGATCTCAAACAACCAACAATCTACAATAAGATGGCCCTTATGCAATCTGCATCAAATGGGTTTTGTATTTTCTGTTACCTAGCCCTTCCATATCCACATCTGTACAATATGAACACATCAATTTCTTCATATTGCAAGAAACAGCGCCTGAACCCTGCAAAACTGGTGACTGGCGCAAGTTGAATGGCCGCAGAAACCATGTTAACCGGG | |||||||||
gi|70299299|gb|DR522364.1|DR522364 WS02711.C21_I14 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02711_I14 5, mRNA sequence CAGCCCTTCTGCTATCCACAT EST sequence (targeted fragment marked with yellow): TTTGCCATTGGCGATAACTGTAATAGCCTCAACAATGAAGAGCAAGAGAGCTATAAATGACTGGAAGTTTGCCTTAAGGCAAATGCAAAAAGTGGATTTAAGTTTTCCAATTACTCATCCTCGCATTGATCGAGATTTGTATCAGCGATTGAGATGGAGTTACGATGCTTTGCCCACCACTGCTGATTTGAAAAACTGCTTTCTTTACTGTGCCCTGTTCCCCGAAGATGCACTAATTCGCGAGGAAGATTTGGTCCAAATGTGGATCTCAGAAGGTCTGATTAAGACCAGTGATGGGGACTACGACTATTTATTGGACACTGGGCGCAGCTATGTAAAGTTGCTTCTAGATCGTTGCTTCTAGATCGTTGGACACTGGGCGCAGCTATCTAAAGTTGGACACTGGGCGCAGCTATCTAAAGTTGGACTACGACTATTTATTGGACACTGGGCGCAGCTATCTAAAGTTGCTTCTAGATCGTTGCTTGCTGAATGGGCCTTTTAGCTTTAATGCTGATCGGGTTATTGATAACCATAGCTTTATTTCTGTTCACGATGTAATCCGCGATATGGGAATATATATTGGAGAGAAAGAGGAAAATTATGCATGTAGGGCAGGTCAAAGGCTTCAACATTTCCCCGATATGGAGGCCCTTGCTGATTGCAAACGATTATCAGTTCGGAACAACAATATTACGTCTTTGCCGACAAAGGAATTTAGATGTCCAAAATTAGTTTCTTTATTATTAGGAGGAAATACAGAATTGAAAACAATTCCAGAAGGCTTTTTCCTCAACTTCCCCTCTTTGAAGGTATTGGACCTAGGCTGAACAGCGTTAACATCATTGCCAACATCATTATGGCAATTGATACACCTCGA | |||||||||