| mature miRNA: CGGACCAGGCTTCATTCC species: Hevea brasiliensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109685551|gb|EC608366.1|EC608366 Y46B12 YLX600 Hevea brasiliensis cDNA clone Y46B12 5', mRNA sequence CGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): AGCGGCTCGGCTGTTGTTCGCCCACAGCTTTTCAAGCAATTAGAAGCGTTTAGCGAAAGCTTATTGTGGATTAGTTGCAATGGCGCCGGGGAAAGCTGACAGTTCAAAAAAGCCTGATCCAAAGGCACAGGCTGCCAAGGTTGCAAAAGCGGTGAAGTCTGGTCCAACCTTCAAGAAGAAGGCCAATAAGATCAGAACTAAGGTTACATTTCATCGCCCAAAGACATTGAAGAAGGAGAGGAATCCCAAGTACCCTCGCATTAGTGCTCCACCAAGGAACAAGCTTGATCATTATCAGATCTTGAAATTTCCTCTCACTACTGAGTCAGCTATGAAAAAGATCGAGGACAACAATACCCTTGTCTTCATAGTTGATATTCGTGCTGACAAGAAAAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTTAATACCTTGATCAGGCCTGATGGGACGAAGAAAGCGTATGTCAGGTTGACGCCAGACTTTGATGCCTTGGATGTGGCAAACAAAATAGGAATCATTTAAATTAGTTACTGGCTTTCTCTTTCTAGTTTTCGTCATTTTGTTTTGTTTCAGAGTAAGGTATTTTTGTTGTGACATCAAGCAGAGAGATTTGCTAAATTACTTCAAACTTGTAAACTTGTGGTACTGCTTTCTGGTTATTTTCCATCTTTTTTCAATTTAATTTCTGACTTTATAG | |||||||||
gi|109677507|gb|EC600324.1|EC600324 Y64B04 YLX600 Hevea brasiliensis cDNA clone Y64B04 5', mRNA sequence CGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): CGGCCCTGATCTACTGTCTAGATCTAGCAAATCTGGTAGCTCAGCAAGTGGTAGAGATGACAGCCAGCAGTCTGGCAGAGCCTCAAAGAGAATCAAAAAAGCAAGAGTAGCTTTCAGAGATCAAGTTGGGGGAGAATTAGTTGAAGTTGTTGGGATTTCAGATGGTGTAGATGTAGAAACGGAGCCTGGTCCAATAGGTGTAAAAGAAGGAAGTCTTGTTGGAAAATATGAATCCCTTATACAGACTACAGTAATACTGAAAGGTAAGGAACAATTGCCAGCAAAGGAAAACAATGCTTCCCAAACAGGTGTTACTAATAAATTGCAAGAAGTCTTGAATAAAGTCAAGACTGTTCCCAAAAGTGGTGTGCATGATGACCTTTATGGAGAAGCATTTTCTGGCAAATTGGGGTCTTCCTGGGCGTATCCTATGGTTACTTCTGGCGGCAAACTGGATCCTCCAACTAAGGATGACAAACAAAAGGATATTGCTGCT | |||||||||
gi|109683782|gb|EC606597.1|EC606597 A303 YLX600 Hevea brasiliensis cDNA clone A303 5', mRNA sequence CGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): AGTTTAGCGGAAGTAGCAATGGCACCAGCTAAAGCTGACAGTTCAAAGAAGCCTGATCCAAAGGCACAGGCTGTAAAGGCTGCAAAAGCAGTGAAGTCTGGTCCAACCTTTAAGAAGAAGGCCAACAAGATCAGGACAAAGGTTACATTTCATCGCCCAAAAACATTGAAGAAGGAAAGAAATCCCAAGTACCCTCGCATTAGTGCTCCACCAAGGAACAAGCTTGATCATTATCAGATTTTGAAATTTCCCCTGACTACTGAGTCAGCTATGAAAAAGATAGAGGACAACAATACGCTTGTGTTTATTGTTGATATTCGTGCTGACAAGAAAAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTTAATACATTAATCAGGCCTGATGGTACGAAGAAAGCATATGT | |||||||||
gi|29054760|gb|CB376912.1|CB376912 Hb07E08 Latex Lambda TriplEX cDNA Library Hevea brasiliensis cDNA clone Hb07E08 5', mRNA sequ CGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GGGGCAGCCGGACAGTATACACAGGGACAGCTGTTAAGGGTTGAGGGGACGACGGAAAAATGAAGACAATACTCTCATCTGAGACTATGGACATCCCCAATGGGGTTAAGATCAAGATTAACGCCAAGGTCATAGAGGTGGAGGGTCCTCCAGGCAAGCTCACACGCAATTTCAAGCATTTGAACCTCGACTTTCCATCTCATCAAGGACGAGGCTACCGGAAAACGCAAACTCAAGATCGAAGCCTGGTTCGGTTCCAGGAAAACAAGCGCTGCCATCCGCACCGCCCTCATCCACGTTGAGAATCTCATCACCGGTGTCACCAAGGGCTACCGCTACAAGATGCGGTTTGTCTATGCTCACTTTCCTATCAACGCCTCCATCACCAACTCTAATACTGCCATTGAGATTCGTAACTTCCTTGGGGAGAAGAGGGTCAGGAAAGTGGATATGCTCTAAGGTGTAACTGTTGTTCGGTCTGACAAAGTTAAAGATGAGCTTGTATTGGATGGCAATGACATTGAACTGGTGTCACGGTCAGCTGCCTTGATAAACCAGAAATGCCATGTTAAGAATAAAGATATCAGGAAATTTCTTGATGGTATCTATGTCAGCGAGAAAGGGA | |||||||||