| mature miRNA: CTACTCCCTCCGTTCCATAAT species: Festuca pratensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|237623654|gb|GO896061.1|GO896061 RDD_cLiFpEfI12nb_7x1_3_D05_cLibkit5_B03 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone CTACTCCCTCCGTTCCATAAT EST sequence (targeted fragment marked with yellow): TTGATGCTAAAGCATAGCACTAAGACAAGGAAGTATATCATCGAGCAAATTCGATTTTCCCTACTTCATTCATGCCAACACAACAATCAGTTGTGACATTGAGATTCTGTTTTTCAAGATTGATAAATAATTAATTAGTAACGTTAGTTAGTTTACATATATGCCATTTTTACCAATGAAATAAATATGGGTCGTCGTATATTCTTGTAACAAGTAACATGTTTCTTGATAAAACCCTCGATGAAGATACAAGTGCAAAGGTACTCACACTTCCCCACCGTTCCAACAAATCGATGTTCCATGTTTTAGCTTACTTTTTTTTTGCACTTTGCATATTTACCACATCATGTGCCACCGACATGTAGTGGTCATAGGGCAAATATACAATGAAAAATATAAAGTGTGGCAAAGGTGCAAATACCCCATGTTAAACCTGTCTAAGTTTGACCGGATTTGGAAAAACTGTGTTGATGGCTATAACACAATGTTTATATATAGCATGGTAGTATATTGTATGATGAGTTAGTAAAATTAAATTAGTGTTTTAGATATTGATATGTAATTTAATAAAGTTGGTAAAAATTAAAGTAGTTTGACTAGGACAAACATATAACTTCAATTATTTTGGAATGGGGGGAGTACTACATAGGATGAATTGAAATTTTTTTTCAAGATGTAAAATAAACATTTTTGTGAAACCTTGCCAGAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|237620513|gb|GO894429.1|GO894429 RDD_cLiFpEfI12nb_30x1_3_D07_cLibkit5_B04 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone CTACTCCCTCCGTTCCATAAT EST sequence (targeted fragment marked with yellow): ATTGCGGTGCTGATCAGAACTACAGTACAATAGAGATTACCGTGCTGGTCAGAACTACTCCCTTCATCCCGTGACATTTGTCTGGTTCATTTAAATTTTGATAAATCTTAGATAAATTTTATAGAACGGAGGGAGTATATTATTATTTTTTAGCGTGGCAGGGTCGTGCATTAGCAACAGATCCCGGTTTATGTGATGGGAAAGGAAGCTTGTCACGTTAGTACACTATTACTCTTTCAGCATCTCGATAAAAGTCACCATAAGACTACCACAATAAAGATGTCATAGAAAGTTTTATACATTTTATCAATGCAAAAACCTAATGTTTCACTATAAGTAATGATGAGAGAGATTTCACGCCCATAAGCTGGTGTTGGCTGCACGATCATCTGTATTTAGATCTAAACTATTTGATGATGAATTGGATGGAGAGAAGAATGAGGTTGACGACAGCGAGGATCTCAAAGAGATTGTTATCGATGATATAGAGCCAAAGGTTTTCAAGGCGATGCTTCATTTCATCTACAGAGATTCCCTCGTTGATGATTGTGAGTTGGATGCATCAAGCTCTGGGGGTTCTATTTTTGATACTTTGGCGGCAAAATTGTTGGCTGCAGTAGACAAGTATGACTTAGCAAGGCTAAAATTGCTTTGTGAATCTTACTTGTGCAAAGGCATTTCTGTGGTCTCAGTTGCGAGTATTCTAGCATTGGCTGATAGTCACCATGCTATGGAGCTTAAAACTGTTTGCCTAAAATTTGCTGCGGAAAATCTTTCAGCTGTGATCCGGACCGAAGGATTTGATTACCTCAAAGACAACTGCCCATCACTCCAGTCAGAGATACTGAGAACTGTTGCTGGGTGTGAGGAACC | |||||||||
gi|237617868|gb|GO891035.1|GO891035 RDD_cLiFpEfI12nb_21x1_2_O08_cLibkit5_H04 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone CTACTCCCTCCGTTCCATAAT EST sequence (targeted fragment marked with yellow): CTTTTCTTGGGAGCTGGAAGCTTCCGAAGCTTCATACAATGTGGGAAAAACTACTACTACCTCTGTCTATTTTTAGATGTCCAATGTTTGTCTAAATTCGAATGTATCTAGACACTCTTTAGTGCATAGATACATCTGAATTTAGACGAACCTTCCGACATTTATTAACGGACGGAGGGAGTAGTTTTGTTGCGTTCTAAGTTTGGACAGTCCCGCTGGTTCTAGGCTTCAAATGGACGATCGATGTTTAAAGAACAATCGAGTTCTGCTATTATTATTTACTAATTATCGGCTCTTGATATGTTTGCCCTTAAAAAAAAAAAAAAAAA | |||||||||
gi|237617756|gb|GO890923.1|GO890923 RDD_cLiFpEfI12nb_21x1_1_K05_cLibkit5_F03 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone CTACTCCCTCCGTTCCATAAT EST sequence (targeted fragment marked with yellow): CGAGCGCCTAGGACGGAGGAGCACGACGAGCAGATCTCAGATTTAGCGAAGGGTAGATTGGGAAATTTACTGGTTTTCACCTGGTCGGAAAATCTCCAGGACGTCTTATATTTCGGAACGGAGGGAGTATATGAGATCTCCGGATCTTGTGTATTGTTCAGAACTTAAGTTAAGACTGTCTCGTTTGATCCTGGTATTCTGGTACGCTATGCAGTATGTTCATGCTATGAGATGCTTCCCACGAATGGGCATGTATTTATATCCTCTAATGTAAAACTCTCCTTGTACAAATGGATGGTACTCGTATGAAAGGAGCAAACATGGCAATGCCAGGATTGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||