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mature miRNA: CTGACAGAAGAGAGTGAGTAC
species: Helianthus ciliaris
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125418781|gb|EL430753.1|EL430753 CHCS442.b1_C15.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCS442, mRNA sequ

CTGACAGAAGAGAGTGAGTAC
||||||||||||| |||.||
CACTGTCTTCTCTCCCTCGTG

EST sequence (targeted fragment marked with yellow):
CATTTCTTTGAGTGAGTTGATGGGGTGTGGTGGTGAAGATGGTGTTGGTGGCGGAGGAAGTTGTTTGAATGTGGATGTGAAGAAGAAGAAAGCATGCCACACTGGCGGTGGTGGATCGTCTAGTGTAACGCGGTGCTGCCAGGCGGAGAAATGTACGAGTGATTTAGCCGAGGCCAAGCCGTACCATCGAAGGCACAAGGTGTGTGAGTATCATGCAAAGGCTCAAGCAGTTGTTGTTGCCGGTATGCACCAAAGATTTTGTCAGCAATGTAGCCGGTTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGCCACAATGAAAGGCGAAGGAAGAACAACTCCCTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCAAAGGATTATCCAAGAGAATCCAACTTAAACTAGATGGAAAGCCTAAATAAAGGAATCTGTGCTCCCTCTCTTCTGTCACTTCCTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGTAATGAAGGTAATGTATAATTATTCTTGTTTGACTTTCTAAAGCCAGAATACCAGTATACCCAATTC



gi|125414810|gb|EL426782.1|EL426782 CHCM6198.b1_K13.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCM6198, mRNA se

CTGACAGAAGAGAGTGAGTAC
||||||||||||| |||.||
AACTGTCTTCTCTCTCTCGTG

EST sequence (targeted fragment marked with yellow):
GGGGGGAATATTTCCTTCTCGAACGTTTCAGACAACTGTCAACGGTCTTTTAATCTTTCTGGAGTTGTTAAAGTTGATAGCAATTCATCAACTGAATCTTCATTCAAAGGAGGAATGGAAGAGTTAAGCTTCTCATCTGAAGTTTCTAGAAGTTTCCATAAACCGTATAGTTATATGAATGGAAGTTCTCCGTCTTTGGAGGCTTCAGTTTGCCCTTCTGATCAGTCAGTTGGTTTAAAACTTGGTAAAAGAACATCTTCTTCCTTAAAAGTGAAGATATCATGTGCACCGGATGTGAAAAAGGTTAAGTTATTACACCAGAGTACAGCGGTTGTGCGATGTCAGGTTGAAGGGTGCAACCTTGATCTTTCATCTGCTAAAGAATACTATAAGAAACATCAACTTTGTGAAAATCATTCAAAGTCCTCGAAAGTTGTTTTGAGTGGTGTTGAACGACGCTTCTGCCAACAATGTAGCCGATTTCATGCGCTGTCAGAATTTGATGGGAAGAAGCGGAGCTGTCGCCAGAGGCTTTCTGACCACAATGCCCGTCGCCGAAAGCCACAAAAAGAAAAAGAAACTATCCACTTTAACTCAAGAAGTCAGTCTTCATCATTTTATGATGGGCAACATCAAATAAGTTTTGTGTCTAACAATGTTCCTGATCTGGTTCAAACCGAACCTGCTTTGAACTCTATTTGGGAAACCACACGCAATTCCCAGCACACAGCCGGTGTTTTTCATCAAGAAGCATACCGTGCTCTCTCTCTTCTGTCAACAATTTATGGGGTTCATGTGAGTCGGACTTCAGCGCGCTTGAGCAACCCATGCATGCAAATG



gi|125409188|gb|EL421160.1|EL421160 CHCL9385.b1_B19.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCL9385, mRNA se

CTGACAGAAGAGA-GTGAGTAC
||||| ||||||| |||||.||
GACTGCCTTCTCTTCACTCGTG

EST sequence (targeted fragment marked with yellow):
CTTTACTTACCCTTTCTTTATTCATGTTATCACAGAGTCAACAAAAAATATGACACAAAGATGTCAAAGATGATAGTGGTGCTTATTTGTGTATTCCATGATTAACATAATGTTTGGTTGCTAATTGATGTGGAGAAAAGAGGGTTTGGTTGAGAACTGACAGAAGAGAGTGAGTACACGCAGGCAATTGTATAGTGGACTATACTCTTGTTTGAGTTATGCGTGTGCTCACTTCTCTTCCGTCAGCCCTTGCTCTTTTTTTTCTCCTCGTGTGTTGATCTTGATGTTATGTGTGTTTTTTTTTTTTGCTTTCTTTTTGTGTTTATGTGGGCTGATGTTATGTGTGTGAGTGGGAATATAATGATAAATGTTGTGGGTGTATGTATTTTATGTGCATTGTTACATATTTACCTAAATCTGGAAGCATGGAAGACTGGAGAAGAAGGTGCAGAAAAGATGGACACCTGGCTACTTGTTTATACTTTATATCCTTCAATTCAGTTAAACACCACCAGCACACCACTGTTGCAATGAAAAAGGCTGCAACTTTCACATGACTAGCTACACCACACCACCACCACTTCTTTATATCTTAAAATCTTTTCTTGCTTGGCTTCTTGTAACATTAAACAGATTCAAATAGGAAATCTAAGAAGAGTAGAAGAAGAGGGACATTAGGGATGTTACAGTAATATACACAGATTACATCACAAGAAGGTTCTTTTCCTATTGCAAGATCTATACTACTGATTGTTTAATTCATTTCTTGATATTATTATAATATATATTCAACTTGG