mature miRNA: CTGACAGAAGAGAGTGAGTAC species: Helianthus ciliaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|125418781|gb|EL430753.1|EL430753 CHCS442.b1_C15.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCS442, mRNA sequ CTGACAGAAGAGAGTGAGTAC EST sequence (targeted fragment marked with yellow): CATTTCTTTGAGTGAGTTGATGGGGTGTGGTGGTGAAGATGGTGTTGGTGGCGGAGGAAGTTGTTTGAATGTGGATGTGAAGAAGAAGAAAGCATGCCACACTGGCGGTGGTGGATCGTCTAGTGTAACGCGGTGCTGCCAGGCGGAGAAATGTACGAGTGATTTAGCCGAGGCCAAGCCGTACCATCGAAGGCACAAGGTGTGTGAGTATCATGCAAAGGCTCAAGCAGTTGTTGTTGCCGGTATGCACCAAAGATTTTGTCAGCAATGTAGCCGGTTTCACGAGCTATCGGAATTTGATGAAGCGAAAAGAAGTTGTAGGAGGCGTTTAGCGGGCCACAATGAAAGGCGAAGGAAGAACAACTCCCTGGAGTTCAAGAAGGAACTTGTTTGTGTGCACAGCCAAAGGATTATCCAAGAGAATCCAACTTAAACTAGATGGAAAGCCTAAATAAAGGAATCTGTGCTCCCTCTCTTCTGTCACTTCCTATCCTAGTACTTCAAAACTCTTGTAGTTCTAATAATGTTGTTGTGTTTGGTAATGAAGGTAATGTATAATTATTCTTGTTTGACTTTCTAAAGCCAGAATACCAGTATACCCAATTC | |||||||||
gi|125414810|gb|EL426782.1|EL426782 CHCM6198.b1_K13.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCM6198, mRNA se CTGACAGAAGAGAGTGAGTAC EST sequence (targeted fragment marked with yellow): GGGGGGAATATTTCCTTCTCGAACGTTTCAGACAACTGTCAACGGTCTTTTAATCTTTCTGGAGTTGTTAAAGTTGATAGCAATTCATCAACTGAATCTTCATTCAAAGGAGGAATGGAAGAGTTAAGCTTCTCATCTGAAGTTTCTAGAAGTTTCCATAAACCGTATAGTTATATGAATGGAAGTTCTCCGTCTTTGGAGGCTTCAGTTTGCCCTTCTGATCAGTCAGTTGGTTTAAAACTTGGTAAAAGAACATCTTCTTCCTTAAAAGTGAAGATATCATGTGCACCGGATGTGAAAAAGGTTAAGTTATTACACCAGAGTACAGCGGTTGTGCGATGTCAGGTTGAAGGGTGCAACCTTGATCTTTCATCTGCTAAAGAATACTATAAGAAACATCAACTTTGTGAAAATCATTCAAAGTCCTCGAAAGTTGTTTTGAGTGGTGTTGAACGACGCTTCTGCCAACAATGTAGCCGATTTCATGCGCTGTCAGAATTTGATGGGAAGAAGCGGAGCTGTCGCCAGAGGCTTTCTGACCACAATGCCCGTCGCCGAAAGCCACAAAAAGAAAAAGAAACTATCCACTTTAACTCAAGAAGTCAGTCTTCATCATTTTATGATGGGCAACATCAAATAAGTTTTGTGTCTAACAATGTTCCTGATCTGGTTCAAACCGAACCTGCTTTGAACTCTATTTGGGAAACCACACGCAATTCCCAGCACACAGCCGGTGTTTTTCATCAAGAAGCATACCGTGCTCTCTCTCTTCTGTCAACAATTTATGGGGTTCATGTGAGTCGGACTTCAGCGCGCTTGAGCAACCCATGCATGCAAATG | |||||||||
gi|125409188|gb|EL421160.1|EL421160 CHCL9385.b1_B19.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCL9385, mRNA se CTGACAGAAGAGA-GTGAGTAC EST sequence (targeted fragment marked with yellow): CTTTACTTACCCTTTCTTTATTCATGTTATCACAGAGTCAACAAAAAATATGACACAAAGATGTCAAAGATGATAGTGGTGCTTATTTGTGTATTCCATGATTAACATAATGTTTGGTTGCTAATTGATGTGGAGAAAAGAGGGTTTGGTTGAGAACTGACAGAAGAGAGTGAGTACACGCAGGCAATTGTATAGTGGACTATACTCTTGTTTGAGTTATGCGTGTGCTCACTTCTCTTCCGTCAGCCCTTGCTCTTTTTTTTCTCCTCGTGTGTTGATCTTGATGTTATGTGTGTTTTTTTTTTTTGCTTTCTTTTTGTGTTTATGTGGGCTGATGTTATGTGTGTGAGTGGGAATATAATGATAAATGTTGTGGGTGTATGTATTTTATGTGCATTGTTACATATTTACCTAAATCTGGAAGCATGGAAGACTGGAGAAGAAGGTGCAGAAAAGATGGACACCTGGCTACTTGTTTATACTTTATATCCTTCAATTCAGTTAAACACCACCAGCACACCACTGTTGCAATGAAAAAGGCTGCAACTTTCACATGACTAGCTACACCACACCACCACCACTTCTTTATATCTTAAAATCTTTTCTTGCTTGGCTTCTTGTAACATTAAACAGATTCAAATAGGAAATCTAAGAAGAGTAGAAGAAGAGGGACATTAGGGATGTTACAGTAATATACACAGATTACATCACAAGAAGGTTCTTTTCCTATTGCAAGATCTATACTACTGATTGTTTAATTCATTTCTTGATATTATTATAATATATATTCAACTTGG |