| mature miRNA: GATGAGCTCTTGAAAAGAAAC species: Helianthus annuus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90451045|gb|DY912928.1|DY912928 CHAX8255.b1_N23.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX8255, mRN GATGAGCTCTTGAAAAGAAAC EST sequence (targeted fragment marked with yellow): GGCTCACCCTCCTCAAAAATAGCTCTGTGAACTTCTATTCTATCAAATCGTAAACCCTAGATTCATCTCCAGTTCTTCTCTCCTCATCTCCTCACACTTCGATCAAATGGTTAATCAAATCCAAACCTAGATTCATCGATTCACCCGTCAATCTAAACCCTAGTTTATACAATTCAATCGTCAATCTAAACCCTAGGTTAGGCAATTCAATCGTCAAAAGATTCAACAGCAAAACTCAATCGATTCAGAGATGTGAACGACACGATGTGAATAATACCTCAGAGCAAAACTCCGACGACTGTTCCAGAACAGATAATAGGCTTGTAATTCGTGATCTAAGTCGACTTGGTTAATTACGAAACTGGCTCTCAATTTGCTTGAGAGGAAGGCGAAGAGGCGTGCTGCTGATAAGAGTGAGGGGAAGTTTAGTGCTGAAGATGTTGCTGCTGGTGCTTCTCTTCAAGAGATCGATTAGGGGCTGCCACTAGTTGGAAATCAGGCACAGGACTTTGAAGTTGAGGCCTTTTTTTTATCAAGAGTTCATCAAGGTACCTGAAGTGACTGCGGATGTTTGCTTTTGAAGTGGTTGAGACGTTATTTGAGTTATTTGAGGAGAATTACGCCGAANAAGGTCTGGTACCAGACGAATCGAGTGTTCGATCGGACTGGGGAATATCGTGGTTGGGTGCGAAGACGGGACCGTTAGTTTACTGGATCGAGGGTTTAAGTTCAGCTATGTATTCCAAGCTCACACTTCCTCTGTTCTGTTTCGTTAACAGCTTAAGGTTTAGTTTCTGATTACTGATTTTGATACTATTTTGGCA | |||||||||
gi|211631499|gb|GE503535.1|GE503535 CCFT3872.b1_O07.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT3872, mRNA sequence GATGAGCTCTTGAAAAGAAAC EST sequence (targeted fragment marked with yellow): ATTCAGAGCATTTTCGTTCGTACGAATCCTTTAGGGTTTTACCGTTTCCGATCGGTCGTCAGTCCTTGTGCCACCGTCTCCGACCGCCGTGCTGCCGATTGAAGCACATTCAATCGCCGATCTTCGTTCGTTTTCAAGAGCACATTCATTTTCTTACTGTTTGCAGTAAGGGAGGGGATATGGAGAATAGTTCTGGTGAAGAGTCTGAGTTCAGTGATTCCGAGATTGCTGATTACAAAGATAAGCCGTATCAGCAGTTACGGGACGGAACACTAAAGGTTAAGTATTCGAATGGCATCCTTAAGTGTCCATTTTGTGCTGGGAAGAAGAAACAAAATTTCAAGTACAAAGATCTACATCAGCATGCTTCAGGAGTAAGCAAAGGTTCTTCTAATCGTAACGCANAGCAAAAAGCTAATCATCTTGCTTTAACACTATACCTCGAGAATGAACTGGCACATGAGGCCGAAACACCGTTAAAAGCTGCAGCTCCCGCAGCTGCAGCTACAGTTTCTGATAAAAAGGATTTGTTTTGCTGGCCTTGGACCGGGATCGTGGTCAATGTGGTCAAAGAGCCCGATACTGAAGATGATATTGAAAACACCGGATACTGGATGAAAAAATTTGCAAAGTTTAAGCCTGAAGCGATTGAGCTGTTAGCAGCGGATGATGCANACCNATCTGCACAAGTGTTGGTGAGGTTCAACATGATTGGATTGTTTTCAGAACGCTATGATGTTTGAGAATATTTTGAGCTTCTCATCACGTAAGAAGAGTGAATGATGCTGAAAGTCCAAAGATCGAAAATT | |||||||||
gi|32540588|gb|CD856772.1|CD856772 DH0AG23ZE02RM1 HaDisDM100vs710 Helianthus annuus cDNA clone HaDisDM100vs71023E02, mRNA sequen GATGAGCTCTTGAAAAGAAAC EST sequence (targeted fragment marked with yellow): GGCACCGGACTTTGAAGCTGAGGCTGTTTTTGATCAAGAGTTCATTAATGTTAAGCTCTCTGACTACATTGGCAAGAAATATGTCATTCTCTTTTTCTACCCTTTGGACTTCACTTTTGTTTGTCCAACAGAAATCACTGCATTCAGTGACCGATATGCAGAATTCGAGAAGATTAATACTGAAATATTGGGCGTTTCTGTAGACAGTGTGTTCTCCCACCTTGCATGGGTTCAAACAGACAGAAAATCTGGCGGTCTTGGTGATCTGAACTACCCTCTGATTTCCGATGTCACAAAATCGATTTCAAAAGCTTTCAATGTGTTGATTGAAGACCAGGGAATAGCATTGAGAGGGCTTTTCATAATTGATAAGGAAGGTGTCATCCAACACTCCACAATTAACAATCTCGCAATTGGTCGAAGCGTTGATGAAACATTGAGAACACTTCAGGCATTGCAATTTGT | |||||||||
gi|211608845|gb|GE485865.1|GE485865 CCFS2273.b1_B18.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFS2273, mRNA sequence GATGAGCTCTTGAAAAGAAAC EST sequence (targeted fragment marked with yellow): TTTCTTTAACCCTAATTTCAGTTTCATATCCTGCCTCTTTCCATCCTCTATCTTTTTCTCTTTCTTGTGCGTTCAGTCCTTCATCTACCTAACCCTAATCACTATCCCATTCCATCTACAGTCAATAAGACCCTATATATCTTTGATTCATCGATTGTAACCTTCGAGTTTGGAATATATGAGTATACAACCCAAGAAATAAAGAGAGAAGGAGATGCGATAGTGGCCAGGAACAGGGGTTAAAGCGATGTCAGATCAATCATCTAGGGTTCTGACCGAGGATTTCAAGCGTTGAGCTGTAATCCGGGTTCTAAATTTCAAGTTGAAAGATGGAAAGGGATTTCATGGGTTTGAATTCAAAAGATTTAAAGGTCATGGTCAAAGATGAAGCTGTTGATGTATGCAAAGAATCAGCATGAGTTGTGAATCTTGAATTATTGAATCTTGATCTTTGATGGGTAATTGTTGATTGTGACGATTTTGTTAGTTGGTGGCTTCGTTTTGTTAGTTGGTGGCTTCGTTGTTGTTGGGATGAAGATTCTTTTGAAAAGCTCATCTGCATCCATGTCACCGAGACCACGACCTTGGATTCTCTCTAAAACGAAAGTAGCAACAAGTCTATTCTTTGGAGGTCTTATTTGAGCATCAATACCATCAGTTTCTTAATATTGTTGTTAGTATGTATTATGTGTCTAAATTTGAATGGTGTATACTTATATATTAAAGATCTAAAGCGGGGTCATAGCTTTCAGTATNGTATTATCGCTTTCCATTTTTTTGAAGTGTAAATAGGTTATTAGGTTTTTTTTTTATTGATGAAACTAGAAATGGGTCAA | |||||||||
gi|32531370|gb|CD847548.1|CD847548 DH0AB60ZH12RM1 HaDevR1 Helianthus annuus cDNA clone HaDevR160H12, mRNA sequence GATGAGCTCTTGAAAAGAAAC EST sequence (targeted fragment marked with yellow): GAGAAAGACAAAGATTATCGTAATGGCTTCGATCTCCTCCTCAGTCGCGACCGTTAGCCGGACCGCCCCTGCTCAGGCCAACATGGTGGCTCCGTTCACCGGCCTTAAGTCCAACGCCGTCTTCCCCACCACCAAGAAGGCTATCGAACTTCTCCACCCTTGCCAGTTTTTTTTTAAAGAGCTCAACGGCTGGAAGGTCTAGCTTCTTGGGGGGGGGGGGGCACATCCCCCCCCCC | |||||||||
gi|90445993|gb|DY907876.1|DY907876 CHAX2708.b1_G05.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX2708, mRN GATGAGCTCTTGAAAAGAAAC EST sequence (targeted fragment marked with yellow): ATAAGGTACAACACCTCGAGCATTTTCGTTCGTACGAATCCTTTAGGGTTTTACCGTTTCCGATCGGTCGTCAGTCCTTGTGCCACCGTTTCCGACCGCCGTGCTGCCGAGTGAAGCACATTCATCGCCGATCGTCGTTCGTTTTCAAGAGCACATTCATTTTCTTACTGTTTGCAATAAGGTAGGGGACATGGAGAATAGTTCTGGTGAAGAGTCTGAGTTCAGTGATTCCGAGATTGCTGATTACAAAGATAAGCCGTATCAGCAGTTACGGGACGGAACACTAAAGGTTAAGTATCCGAATGGCATCCTTAAGTGTCCATTTTGTGCTGGGAAGAAGAAACAAAATTTCAAGTACAAAGATCTACATCAGCATGCTTCAGGAGTAAGCAAAGGTTCTTCTAATCGTAACGCAAAGCAAAAAGCTAATCATCTTGCTTTAACACTATACCTCGAGAATGAACTGGCACATGAGGCCGAAACACCGTTAAAAGCTGCAGCTCCCGCAGCTGCAGCTACAGTTTCTGATAAAAAGGATCTGTTTTGCTGGCCTTGGACCGGGATCGTGGTCAATGTGGTCAAAGAGCCCGATACTGAAGATGATATTGAAAACACCGGATACTGGATGAAAAAAATTCGCAAAGTTTAAGCCTGAAGCGATTGAGCTGTTAGCAGCGGATGATGCANACCAATCTGCACAAGTGTTGGTGAGGTTCAACAATGATTGGATTGGTTTCAAGAACGCTATGGTGTTTGAGAAATATTTTGAAGCTTCTCATCACAGTAAGAAAGAGTGGAGTGATGCTGAAAGTCCAAA | |||||||||
gi|211632814|gb|GE504477.1|GE504477 CCFT4323.g1_F01.ab1 CCF(STU) sunflower Helianthus annuus cDNA clone CCFT4323, mRNA sequence GATGAGCTCTTGAAAAGAAAC EST sequence (targeted fragment marked with yellow): AAAAAACATATAGAGGATCATCTAGGTTTCTTTTACGTTCTAGCTAATAATAATTTACAACATAACACAATCTACCATCATTAAATCCGTAGATTTTCTTTACAAGATCTCATCAGATTCAAAAGAATTATATTCGGTTCTTCATTACTGACCAATAAAATATTTACCCTATCTATTACTCGTAGAAGCGTTTCTTCCCGGAAAAGGGTAGGATTATCTCTAAAACGGGCCACCCACGAATTTCGGGAATATTTATGTGATTCAGTTGAAGGAAGACATATTAAACAGGAGAAAGCAGCAGCATAATCATCTTGCTCCAGTTTCATACAAAACATCTCTTGAACAAGAGGTGGTGGTGGGATTTGATCACCCTCAATCAAATGTTTCCATGTTGTTTCTAACAAATTCACCTTCCCAGCTTTGCAGGCTTCAAGTATCATATGGGAATGACGTTTTGCGTTAAAGTAGTATCCGTGTTGCAGCATTTTTGTGTAGACAAATTCAAGATCATCCCATTTTTTATTCACCAAACACGGCATCTAACATCAAATTAAACGTATGAATATCTGGGAATACCA | |||||||||