| mature miRNA: GCTGCGCCAGTGGAGAAGCCG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14228009|gb|BG846825.1|BG846825 1024015B03.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN GCTGCGCCAGTGGAGAAGCCG EST sequence (targeted fragment marked with yellow): TTTTTTAATACACAGGGTTTTACACTGGCGCAGCGGTCTTGACAGGCTCCCATACCGCTTGGTTGCTATATTGAACAATCTATGCTTCTTCAGCCCCCTCACGGGCCCAGGTCTCTCGAGGACACTCGCGATAGGCTCTCGGGAGCTGCCATGCACAGTTGCAGGTCCCATACGTGCTCGTGNTCATTCTCGCGCCCTGGTTTAAGGCGCTTTTGACACTCCCTAGCACCACCACGCTCATCGCCAGCGCTTTTCCCTAAAATTGGCGCCGATGCTTGTTCCACTTATCTTGTCCTCAAACCCCCACCCCGACACCCGCGCGCCGTCGTCACTGTGCTCCACCTGCCTTGCCCGCTAACCGACACGCCCCCCGCCCCGGCCTCCGGGCCCCGCCCCCGCCTAACTCCTGCACGCAGGCATCGGCCAGGGCGGCGGCCACGTGCACGTGCTGCACGTGTTCCGCGACCCGCACAAGGACGACGTATACGACGACAACGTCACGCTCGCCTTCAAGCTGCCCGTGCGCGATGGCTAGCAAGCCAACTAGCTACGCAGCCTCCCGCAGCAGCATGGCCCAGGATCTCCGACAGCAACACCTCCAGGCGCACTGCCCAGGCATTAGCTGCATCCGCTCACACGGCGCGCCTCAGAATGCACGGCCACGCCATCAGGGTCCACCAGGTCCCAGCTCCAGCCCTCTAGCG | |||||||||
gi|161797271|gb|FC084823.1|FC084823 CACW1423.rev CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cDN GCTGCGCCAGTGGAGAAGCCG EST sequence (targeted fragment marked with yellow): ACGTGACCACGCTTTACCAGACGCTGCTGAAGGAGGACCCGGTGGAGAATCGCGACCGCGAGACGCAGTGGGTGCCAAACTTCGGCTTCTCCACTGGCGCAGCGGCGCAAGCACGCAGTGGGCCGCTGCCCAGCGAGAAGGAAGAGCGGTTCCGACTTTAGTGCATGTTGTTTGGTGCTAGTTATGCTGTTGCAGGCTTAGCGTGCTGTCGAGTGCTGGTGCATTGTGGACTGCTTGCATATCTTGTAAGCCTGTGTAAGCGGAGTGCTTGAAATCCGCATCCATATCTTGACGGGAGCCGGGTTTGCCTTTGCTTCGTCTGCACGTTGATGATACAAAGGTTTCTCCGGTTTTGATTGTTGGCTGTACACTAGCAGGTGGTTTGTTTGCATGTTGCTTGAGTCATCAGAGCAGGCCAGGTTTGCGCCAGGGGGTGCGCACACGGGAGGCAAACGGAATCAGGTTTGGGGTGGGAACTGAACTCAAGAGAGGTGGCTGGGATGGGCGGCGCATCAAGGCACCAGCCAAGAGTGAAGGAACCTAGGTTAGGTGAGATGGCGGGAAAGCTAGAGTGCGTGTGGATTGAAGTGCAACAGAGTGCTGGCCGGCTGGGTGCGGCTGCTGGGGTGCGGGCTGGCCCGCAAAGGTTGCACCGTGTGCTCGTCAACCGTCTTGTCATCGCAAGCGGCCCTGTATAAAAGAGGTTTCG | |||||||||
gi|14228432|gb|BG847248.1|BG847248 1024016D12.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN GCTGCGCCAGTGGAGAAGCCG EST sequence (targeted fragment marked with yellow): GCACGAGGACCGTGCCGGGGCTAGGTCGTGTCTATGACTGGAAGCTGCAGCACGACGTCAACTCTGCATTGCTAAAACAGAAGAAGGACAAGGAGCGCATGGAGAAGGTACTAGAAGCGGCACGGGTGCAGCTGCAGGCGCGCGGAAGCAAATGAGCGCGCCTTCCAGGAGTGGATGGCGGCCAAGGCACAGGAGAAGCAGCAGCAGCATGTGCAGAGCCGGCGCATCAACTACGTGACCACGCTTTACCAGACGCTGCTGAAGGAGGACCCAGTGGAGAATCGTGACCGCGAGACGCAGTGGGTGCCAAACTTCGGCTTCTCCACTGGCGCAGCGGCGCAAGCACGCAGTGGGCCGCTGCCCAGCGAGAAGGAAGAGCGATTCCGACTTTAGTGCATGTTGTTTGGTGCTCGTTATGCTGTTGTAGGCTTAGCGTGCTGTCGAGTGCTGGTGCATTGTGGACTGCTTGCAAATCTTGACTGGAGCCGGGTTTGCCTCTGCTTCGTCTGCACGTTGATGACACAAAGGTTTCTCCGGTTTTGATTGTTGGCTGTGCACTAGCAGGTGGTTTGTTTGCATGTTGCTTGAGTCATCAGAGCAGGCCAGGTTTGCGCCAGGGGTGCGCACACGGAGGGCAAACGGAATTTGGTTGGGGGTGGGAACTGAAC | |||||||||
gi|22055306|gb|BQ811747.1|BQ811747 1030025C09.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona GCTGCGCCAGTGGAGAAGCCG EST sequence (targeted fragment marked with yellow): TCGGCACGAGGCGCACTCGCACGCGGTGTCCCCACCGGCGCAGCCCAGCGCCACCAAGGCCAAGGCCAAGAGCACGAGCAGCGCGATGGCCACCACCGTGTCGCCCGCAGACGCCAACCTCGGCCTGCACATTGCCAACCGGCTTGTTGAGATCGGCTGCACCAGCTGCTTCGCGGTGCCCGGCGACTTCAACCTGCTGCTGCTGGACCAGCTGCTCAAGCAGCCCGAGCTGTCCCTGGTGTGGTGCTGCAACGAGCTGAATGCGGGCTACGCGGCGGACGGCTACGCCCGCAAGCGCGGCGTGGGCTGCCTGTGCGTGACCTTCTGTGTGGGAGGCTTCTCCGCCCTGAACGCTGTGGGCGGTGCCTACAGTGAGGACCTGCCGCTCATCGTCATCAGCGGGGGGCCCAACTCGCAGGACCACGCCTCCAACCGCATCCTGCACCACACCACGGGCGCCAACGAGTACGGCCAGCAGCTGCGCGCCTTCAGGGAGGTGACCTGCTGCCANGGTGGTCATCCAGCACATCGAGGACGCGCACATGCTGCTGGATACGGCCATCAGTGAGGCGATGCTG | |||||||||
gi|49469968|gb|BP097829.1|BP097829 BP097829 Chlamydomonas reinhardtii C9 various conditions Chlamydomonas reinhardtii cDNA clone GCTGCGCCAGTGGAGAAGCCG EST sequence (targeted fragment marked with yellow): GCCAACGCAACCTCGCGAACCAGGTTTAACAGCTTCAACGCTATAGTTTCCGAGCTCCAACCGGCGTGGCGTTCGCAAACACTTCCGCCGGCCCCGTCACCAGCAAGGCAGCGGCCGCCGCAGCCGCGTCCCTGCCCGCCGACGCCGCCTCCGCGCCGCGCGGCGACACCCGCCTCGTCGACCAGTCCCAGCCGTCGCCGCTGTCGAAGCACCACCAGGGCCTCTCGCCCGGCAAGCAAGTCCTGCAGTCGCACTCGCAGCAGTCGCCCTCGCAGCAGCAGCAGCAGCAGCCGGGCGCCTTGAAGTCCCAGGGCTCGCCGCACTCGCACGCGGTGTCCCCACCGGCGCAGCCCAGCGCCACCAAGGCCAAGGCCAAGAGCACGAGCAGCGCGATGGCCACCACCGTGTCGCCCGCAGACGCCAACCTCGG | |||||||||