miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GGAATCTTGATGATGCTGCAG
species: Vitis shuttleworthii
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|51575591|gb|CV093427.1|CV093427 FAMU_USDA_FP_1450 Vitis shuttleworthii L., grape Vitis shuttleworthii cDNA clone JLVs079_B09 

GGAATCTTGATGATGCTGCAG
 |||||||||||||||| ||
ACTTAGAACTACTACGAGGTA

EST sequence (targeted fragment marked with yellow):
AGATACTATTAGCTTTTCTCTTCACATTCTCTCATCTTTTCAAGTTTTTGATTGTGGGTACATGTATAGAGTACCGTAGAATAGCTTTTCTACCAAGTGGGTCTTGTTTATTTCATAAGCTGAGATATGGTTTTGAAGCGTTCTGCTGTCCTTCCTTGCATTTGCCTTTACTTTTTCCTTCATAGAATGTGGTCTTGAGGTTAGGGCTAGGCTCCTTCTTCCTTTACATCTCTTTTTACTCGTTTTCTTTCTTTATTCCTTTACTTTTGCATGGATTCATATGATGAAAGAAGATCTCAAGACACCAGTCACTGTTTGCGGATGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTTTGTGGTCCCTTCCACACTCCGATGGCTCTTTGATATGGGAATCTTGATGATGCTGCAGCGGCAATAAATGGCTAATTTTTATATAAATCATCTCCAAAACCACAAAACAGTTG