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mature miRNA: GGCAAGTTGTCTTTGGCTACA
species: Catharanthus roseus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|164561256|gb|FD424574.1|FD424574 RT00039R_T3_039_G04_01JUN2004_020_ab1 CrUniGene root Catharanthus roseus cDNA, mRNA sequence

GGCAAGTTGTCTTTGGCTACA
|||||||..||.|||||| ||
CCGTTCAGTAGGAACCGACGT

EST sequence (targeted fragment marked with yellow):
TAGTGGATCCAAAGAATTCGGCACGAGGCTACAGTGAATTATTCCTTCATTTCCTTCTTCCTCTTAATTCTACGTTGCCATGGCAGAAGCAGCAGCATTTAATTAATTAATGCATTTCCATGTAGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATATTTGCCGCCGTACGTATTTATACGAACTCCTCGGCAAGTTGTCTTTGGCTACATCCTACTTCCTTCATCTCTTTTAATTAGGCTTTCGGCATCCAGTAAAGACGGAACTAAAGGGCCGAGCTGCGCTGGGATGGCGGCCAGCCATTACTCTCCATATTTGTAAACATTCTTTATGAATACTATTTATTATTTTATGTTTGTAAAAAAAAAAAAAAAAAAAA