| mature miRNA: GGCCGGGGGACGGACTGGGAA species: Quercus petraea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|262484081|gb|FP045641.1|FP045641 FP045641 LG0AAC Quercus petraea cDNA clone LG0AAC26YA20RM1 similar to PplGI.3|TC62440 homolo GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGACGCCCGGGGAAGACCGCCGAGGCGGTCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGGAGCAG | |||||||||
gi|262524090|gb|FP043402.1|FP043402 FP043402 LG0AAC Quercus petraea cDNA clone LG0AAC3YN04RM1 similar to PplGI.3|TC62440 homolog GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): AAAGGATTCTACCCGCCGCTCGGTGGGAATTATACTTCATGGCGGCCCACGCGGCTCGTCCGCCGCGGGGGCTTGGCCAAAGACACGTGCCTCTGGGGGCCCGAGGGCCCCTACTGCAGGTCGGCAATCGGGCGGCGGGCGCACGCGTCGCTTCTAGCCCGGATTCTGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGACGCCCGGGGAAGACCGCCGAGGCGGTCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCCAC | |||||||||
gi|262523902|gb|FP049848.1|FP049848 FP049848 LG0AAC Quercus petraea cDNA clone LG0AAC14YC04RM1 similar to PplGI.3|TC87553 homolo GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTAGACAGAAAGCCTATCACTTCAAGCATTATATTGTGCTTTGGATTAAGCTGAATGGTAAACATACAAATGAACTCACGTAACCAAGCCTGAATAGACAGAAGAAGGATTCAGTCATTTTGTTACACCCAATTTGGGATACGAAGAAGAAAAAATCGAAATAATCATTTTGTTACAAAATTAGGTCAAAGGTGAACTAACTTTCTTCCTTCCCAATATAAGAAGCCTGGCTTACACAGTTTGATGTATACAATCTACATAGAAGAATAGCTTTGGCAAGTGCCATCACTTCCACAGCTCTTCCATTGGGATTCCACGCTCACGAGCAACATCCCTGAACTGCCTCATTTTCTGCACTGCAACAACTGTGGCTCTTGCATTGTTGAGGGCATTGTCACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGACCCCCGGGGAAGACCGCCGAAGCGGTCGTTCCCAGTCCGTCCCCCGGCCCGCACGCGGCGACCCGCTCTCGCCGCG | |||||||||
gi|295232354|gb|FN713767.1|FN713767 FN713767 WZOAQPAB Quercus petraea cDNA clone WZ0AQPAB12YH06FM1, mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): ATTTCTTATTGTGAAACACTAATAATGCATTAGCAAAAAAGAGAAACACTAGTAATGCATGCACGTGCATTTGATTGAAACCAATTGACTTCTTTCTTTTGTTTCTGAAATATTTTTAGTTGGGTACCTTTGTTTAAAGCCAAATTCTGCTAAGAAAAGTACAAACATGGAAGACAATATTATGAATTTAGTTGTGTTTGGAGTCATTTCATGGTCAACAATATTTCTGTTGACAAGGAGGGTCTTCCCTAAGCTTTCATTTGATTTCTGCAACCGAGTTGTTTCAACGATTCATGCAATTTTAGCTGTAATATTAGCCTCTCTCACTGTTCAAGATTGGAGGTGCCCAGTTTGTCCCTTGGCTTCAAAATCTTCTCCAGAGCAGATGCAAACTCTAGCGGTAACCCTTTCCTATATGATCTATGATCTGTTATGTTGCCTCTTTGACAAGCGAGTCAAATTGGACAATTCGATCCATCATCTAGTCAGCATTGTTGGAATTGGAGCAGGCCTAATCTATAAGAAGTGTGGATCAGAGATGGTCGTGGCATTATGGATAACTGAAATTTCCAGCCCTTTCCTCCACTTGAGGGAGCTTCTAAAAGAGCTTGGTTACAAAGATACCGA | |||||||||
gi|262520940|gb|FP042616.1|FP042616 FP042616 LG0AAC Quercus petraea cDNA clone LG0AAC6YA19RM1 similar to PplGI.3|TC87553 homolog GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): GCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGCCGAGGCGAGCCTTGGGTCCAAAAAGAGGGGCAGAGCCCCGCTTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTTCGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGACGCCCGGGGAAGACCGCCGAGGCGATCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGGAGCAGCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|262482499|gb|FP048518.1|FP048518 FP048518 LG0AAC Quercus petraea cDNA clone LG0AAC17YN13RM1 similar to PplGI.3|TC87553 homolo GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): GCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATCGGCCCGCCGAGGCGAGCCTTGGGTCCAAAAAGAGGGGCAGAGCCCCGCTTCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTTCGGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGACGCCCCGGGGAAGACCGCCGAAGCGGTCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGGAGC | |||||||||
gi|295167734|gb|FN745366.1|FN745366 FN745366 WZOAQPAG Quercus petraea cDNA clone WZ0AQPAG11YI10NM1, mRNA sequence GGCCGGGGGACGGACTGGGAA EST sequence (targeted fragment marked with yellow): TTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGTTCGACGCCCGGGGAAGACCGCCGAAGCGATCGTTCCCAGTCCGTCCCCCGGCCGGCACGCGGCGACCCGCTCTCGCCGCGGGAGCAGCTCGAGCAGTCCGCCGACAGCCGACGGGTTCGGGACTGGGACCCCCGTGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCCCT | |||||||||