| mature miRNA: GGGATGCTGCTGCTGTGGTGG species: Cryptomeria japonica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190373512|gb|BY909626.1|BY909626 BY909626 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL039_N11 3', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): CGTCAAAAAATACAAGCTAATTTATTGTGTAAAGAATTATATATTGCATGACAGGGGAAGACAAACCCGTAGCTAGCAATCGCCCAAAAAGTTTGAGGAATGTTAAAAAATTACTCAACCAGGCATTAGCTCCCCCTATTAAAGTGCTCCAATCCTTTAGACAAACCCGTAGCTCACAACTTTCATTTAAAAATGACTTTTTACAAAAAATAAATCATGATTTCTGCATACAGAATAACTATCAAAACAGTTTACAACGAAGACACATTTTGCTGCCACTTCAGCCTGGAGATATGGAGGCCTTTGCTGCTAGATGTAATAATGTTCGTCGGTGATAAGATGCCCTGAGTTTTTTGTATTTTTGAATAAAATCAGATAGTTCCATCTCTCCAGCCAGGAGCTGTTGATGTAAATTTTCTGATTCATCATCAGCTGCAGTAGCAGCATCTCGAAGCCTTTCTAAAAGAACTCCAGGTGCACAAAAACTGACAGATTCTTGAACTCGTTTTTCAAGCTCATGAAACTTTTCCTGAACAGCTGCTAGCTCTGTTGTTCTTATGA | |||||||||
gi|190378944|gb|BY879544.1|BY879544 BY879544 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL005_J17 5', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GGGCGCTCGCTCTATAAAGAATCGTGCTTGTAGCAAATCAACAATTATCCAATTCTAGAACATACGCATATCTACCCCGCACACTCAACAGATAACTTTTTCATATTTCTTTTATCTGATATGCATATTTATCTACGTGTGGTTTTCTATGCATAGGCTGCGGATGGGAAAATAATCCTTAAACACGGATCTGCTACACCATAACATTTCATTCTCTTACTCAATTTAATACCTGCAAAACTTATTCATCTCTGGCCAAATTTGGCAAAGTTGTCGTGCCATCATCGTTCGTTACAGCAAATTTGGTTGCCACCTACAATGAGTCCCAACAATATATCCGCCAAGCTAGTGCTTCTTGGTGATATGGGAACTGGAAAGTCTAGCCTTGTTTTGCGGTTTGTCAAAGGCCAATTTTTTGACTATCAGGAATCAACCATAGGAGCAGCATTCTTCTCTCAGACTTTAGCTTTAAATGAGACCACGATCAAATTTGAGATATGGGACACTGCAGGGCAGGAGAGATATCATAGCTTAGCTCCTATGTATTA | |||||||||
gi|190389899|gb|BY911954.1|BY911954 BY911954 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL046_O03 3', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): CTGGGCAAATATTTATACGCTACTGTTTTTATTCCATAACCTTTTTATGCAAAATTACAACAAGGATCTATACATAGAAAGCACAAGCTCTGCGCCAAACGAGACGACATAACAAAAATTAAAAGACACTAGACTCTGAAACACAGCTATTATGAAGCTTCCTTTCAGTGTGGAACTAAGATTCCCACAGCAGAAGCATCCTTACAAGTAGATTAATAATAATATTGCTCTTGTCTGTAGTGGGGACAGTACTAGAACTAGTGCTAGGCTGATGCTGCTTCTGCTTTGTTATCCTTGATTGATCTGTTGTATTTCATGTGACTCCTGACAAGCTGGCCTGCAGCAAGAGCAGACATGAGGGACAGCTCTCCTGCCATTACTGCAGCTGCCACTATTCTTGCCAAGTTTTGAGCATTTCCTCCAGGAGATTTAGCATTTGCTCCTTTCACT | |||||||||
gi|148769200|gb|DC430674.1|DC430674 DC430674 Cryptomeria japonica cambium and surrounding tissues Cryptomeria japonica cDNA clon GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): AAAAAACTCCCAATTGACATTACTGTTTGTTGTTTTCTAACTGAGGGATTACTTAACGTAGTAACCACCTACCTTACTCTATATCGTGACTCGGATCTTGTGCACGAGCGATCAATTCATTCAAGAGAACCTACCTTACCTTACCTCAGGTGACGAGGGGTGTACTTCGTCGTACTACCCATCCAGGTACCTTACCTACTTTGCATCCTCAAAGAAGAGAAAGGTCCAGAAGCGAAACCTACCTCTCATCATTCAGTCTCACTGACCAACCTTCACCTGAACTCAAAGCTTCGCAAGCAATAGAAGAAGACCAAATCAAAAACCCCCACCCCCAACCCGCCAACATCGAAAGAAAAAGGCTCAGAAACCAAACCACGAAAATGGCAGCCTCAACAGCAGCAGCATCCAAAAAGGCGTGGGCGGTGATCGCGGGAGTGGGACCTGGCACCGGTGCAGCCATCGCCCGTAAATTCGGGTCTCAATATTCCGTCGCCCTCCTCTCCCGCAGCCCCTCCACCTACGAACCTCTAGTCTCCGACATTCGATCGCGCGGTGGTCACGCCATCGGCATCTCC | |||||||||
gi|190396195|gb|BY881376.1|BY881376 BY881376 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL010_J03 5', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GAACATTACAGAGCAAAGTAAGAAAGCAGAGCAGAGTTAAAAAAAAGAGAGAGAGAATGGCACAAGCAATGGCTTCAATGGCAGCAGCATTTACGGAGGGTGGTCACATGAGCATCGCCCGCTTACCCGCCACCAGCTCAGCCAAGCCAAGCCTCTTAACAGCCCGCGCCCACCACAGCAGCAGCCTCCAATGCGCCGCCACTGAATCCGCCGCCGCCGCCGCCAATCAGAGCAGCCGCCGCTCCCTTCTGGGGCTCCTCGCCGCCACTGTATCGGTGGCGGGAGTGACCAACAAAGCTCTGGCGGCGGCCACATCCATCAAGGTCGCGGGCCCCCCTCCCCCCTCCGGCGGCCTGTCTGGAACGAAGAATTCGGATGAGGCTCGAGACCTGGATTTGCCGCTGAAGGAACGGTTTTATCCGCAGCCGCTATCGCCGTCAGAGGCCGCCGCCAGGGCTAAGGAGTCTGCGAAGGAGATCTTGAATGTGAAGGATCTGATAAACAAGAAGGCTTGGCCCTATGTTCAGAATGACCTCCGCCTTAGAGCTTCCTATCTCCGTTACGACCTCAACACCGTCATCTCTGCCATGCCCAAAGACAAGAAGATGCCCCTCAAGACCCTCACCAACAAGCTCTTTGACA | |||||||||
gi|29058918|gb|BP175421.1|BP175421 BP175421 Cryptomeria japonica inner bark Cryptomeria japonica cDNA clone CC2858R 3', mRNA seq GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GACATGCTTATGAACGTGGCACAGTATTTGTTCAGTGTGCAGGCTGTGAAGTGTATCACAAGCTTGTGGATAATTTAGGCCTTGTTGTGGAGTATGATTTGAGAGATGATTTTTGCAGTGAAGCAGATCCTAAGGAGCTGCCAGACAAGTAATTTCCCTATATTATCTCTTAAGTAATATTCTTAACCATGCATCGAAAATTTTACTTACGCTTCACCAGATCAGCAGCATTTCTAACTGCATAACTATCTGGGCATTAGAAGAGTCACCCAATAATTTAGCCTTGGATTGAGCTCACATACTCAACCATTTTGGGAAATCGTAACAGCAATGTACCAAGTCAGTTGACTAACTATTTGTAGAGAAGAATACTTGTAAAAGATCTAGTAATGGTCATGATTGTCATGGAGAAATTTAACTTATTGGTTTGTGATTAAATGTCTAAAGAATTGTAAGAGAATTGACATTTTGTGCTGGCATAAACNTGTCCTTTTTTTCTTCAAATTATATTATTCAATTAACGCT | |||||||||
gi|190398956|gb|BY889267.1|BY889267 BY889267 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL032_D04 5', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GAGGTAATGACGAGTCTTTTTTCTCCATTCTCTATTCCAGAACTGCGCGGGGAAAACAAATTTCACTGATTTCATCTCTGGGATTGAGTGGCAAAACAAATGCAACTTATTTCAGGTGGGCATTTTAACACATTTATGAATGCAACCAAGTAAGAAAAGAAGAAGTCGAAAAGAATCCAGAAAATGGCGACAACGCCACAGCAGCAGCAGCCGCCACCACCAGCGAAGCAACCGAAGGGTCGAGGCCCCTCAGTTAGCAGCAGCAGATCTGGAGGTCTAATGACCCACTTCGCCATGACAGAGTTGAAGCAGAGAATCCTCACTTCTCTCAACAAGCTTGCGGATCGAGATACCCAACAAATAGCAATGGAGGACTTGGAAAAAACCATTGAGGGCCTCAGTCCAGAAGGCATCATTGTGTGCCTCAACTGCCTCTATGACACAGATTTCCAGCACAAGGGCATTGTCCGCAAGGAATGTGTTAAGCTGCTGGGTACCATGGCAACTACGCACACTGATTTAATCTC | |||||||||
gi|190400420|gb|BY881558.1|BY881558 BY881558 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL011_B03 5', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GGGCGCTCGCTCTATAAAGAATCGTGCTTGTAGCAAATCAACAATTATCCAATTCTAGAACATACGCATATCTACCCCGCACACTCAACAGATAACTTTTTCATATTTCTTTTATCTGATATGCATATTTATCTACGTGTGGTTTTCTATGCATAGGCTGCGGATGGGAAAATAATCCTTAAACACGGATCTGCTACACCATAACATTTCATTCTCTTACTCAATTTAATACCTGCAAAACTTATTCATCTCTGGCCAAATTTGGCAAAGTTGTCGTGCCATCATCGTTCGTTACAGCAAATTTGGTTGCCACCTACAATGAGTCCCAACAATATATCCGCCAAGCTAGAATCAACCATAGGAGCAGCATTCTTCTCTCAGACTTTAGCTTTAAATGAGACCACGATCAAATTTGAGATATGGGACACTGCAGGGCAGGAGAGATATCATAGCTTAGCTCCTATGTATTACCGTGGTGCTGCTGCTGCTATAATTGTCTATGATATTACAAGCTTGGATTCATTTATTCGTGCAAAGAAATGGATACAAGAACTTCAAAGACAGGGCACTCCAAACATGGTGATGGCACTTGCT | |||||||||
gi|190399112|gb|BY901023.1|BY901023 BY901023 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL013_N22 3', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): CACATGGCCGGTAACAGAAACTTCCTTCCATTCACTCCAACCACATTATAACTCGCCCCTGTAATGTCATCGATCGGCAGTTGACCGGGGAAACCGGGGTAAGCCCCCTTCCCGTAAATTCCAGCACAAGCCGACACAGCCTCCAGCGGGGCAGCAGCGTCCCCCTGAAAATAACCAGTATTAAAGGGGTTCGTCACTGCTCCCGCCAAAACACTGGCAATATTAATGATCATACCATCAATGCCCACGTCAGCATTAGGGGACACCAAAGGAGGGGTCTGAGGCCCATAGAGCGGCTGATGAAAAGGCCACGCACACTGCCCCGGGCACTGAGTCTCCGAATTTCCAACCCAAGCGTAGGGCACAAAACTCTTCCCATATTCCAGCCCGCCATGAAATCCGCAGGAGCTCAAGCAGAACCTCTCAACGCTGACATCCGCCGCCGTAAGAACCAGATAAATCGCGTTGCTACTGTTCTCCGGCGGCGCTCCGGACTGCGCAACGCTTTCCGCTAGGGCCGCCACGTCGGATCTCGTTAGGGTTTTACCCTTTGAATACGCTTCGTCGAGCTTC | |||||||||
gi|190380124|gb|BY906599.1|BY906599 BY906599 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL030_N05 3', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GGCACAGAACAAACGATAGACTTAATTCCATTATTAAGAAGTAACATACACTTAGCTAAAGTCGAGAAAGATGAGTCATATCTTGAACACAATCATCCTTCCAGTAAAACTCTTTTACTGCTATAAAAATGAAGACCGAAACCTTTATCCAGTCTAAATCTTACATCAAAAAGCTAAAAACAGACTACACTACAAACTTAGAGACTACTATACTATCATCTATGTCCATTAGCTACAAAACGGTTCAATATTTATCATCACTGGAGCTGGAAGGCCATCTAGTCAATCTAGTCAACCTCCTCCATCTTGCTACCCTCTGCATCAGCAGCATCCTCGAGAGAAGGCATTTCTGTATCTGCATCAACAGCAGTTTCATCCTCATCAATGCTCAGACCCAGCTTT | |||||||||
gi|148769624|gb|DC431098.1|DC431098 DC431098 Cryptomeria japonica cambium and surrounding tissues Cryptomeria japonica cDNA clon GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): TGGCCTACATTTTTTCCCTTCCAGACGAGAAAAGGATCCAGACTGCTATAACCCAAGCATGGCAAGCCGTAGATCAAATTGAGCGGTTTCGAATTCCATAATTCCTCAAAAGAAAACCACTTGAAAAGCCCTAGGATGGGCTCGGCAGGTGCACCAGCAGGCGGTTTCGACATGCATAAATTCTTCAAACCAGGCAGCCCTGCAAATGCCGTGATGCCGCCTCCTTCAGCTCCCTACCCGCCTTCTCAGTACCCACCTAATTCTACCTATTCCGCCGCATCATTTTCCTTCCCAGCCCAACAGCAGCAACAACAACAGCAGCAGTATCTCCATCATTATAACCCTAACCCTAGCCCACCAAATCCTCGCCCCTATACCGGCTTGCAAAACCAGTCTGTTTTTCCGCAGCCCACGATACCGCCTCTGCCCTCCCCCATCGCAAGCCCTCCTTTGGATGGCGCGCGCTTAATGGCTCTTCTTACTGCGCACAATTCAGACAATAACAACGGAAACAATAGTAATTTGCCTCTGCCTTTGTCATTGCCGTTGCCTTTGCCTTCGAATCTTGAGCTGCCACCGGCTGCCCTAAGCGCT | |||||||||
gi|190380557|gb|BY879625.1|BY879625 BY879625 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL005_N04 5', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): GGTCTCTACTATCTGCTCGGAGTAATTGGGTAAATAATTTCAGTGGAGGTGAAACAACAGTAAGCAGCAATGGCGACGCCTGCAGCAGCAGGTGGAGGAGGTGGGCAGGCAGTTGCAGCAGCAGTTGGAGGAGGTGGGCAGGCAGTTGCTGCTGCAGCAGCAGGGGGCAGGCAACAACCGCAGCAGCAGCAGCCGCCAGGAGTAGCGCAGATGCTGATTGGGGTATTGAGAATGGCGGTATTTGCATACTTTGCTATGCAGATGTTCTCCCCTAAGAAGCCTTCCGATCCGAGTCTGCAGATGTCCAATCTATTTTCCAAGGGCGAAGAACTAGACATGTGGCTTTATCTCAGTGACAATGAAAGATTCTATAATTTTGGCGATGAAGCAGCTCTTGTCTGGCAAGAAACCAACGTGCCTTATGCAGTTTGGGGGCCAAACAGTGTCCGAAAGCAGAAAATTATCTATCATCCATC | |||||||||
gi|92487234|gb|BJ938456.1|BJ938456 BJ938456 Cryptomeria japonica pollen Cryptomeria japonica cDNA clone CP11182, mRNA sequence GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): TGCCGACGGGAGCTATATGGAGTAGAGTAGAGCCCGCCCCTCTATTCTATCTGGGGAGGCCCTATATATCTATGAACTATGGCGACGGAGGAGAACTCAACCGCATCTAGAGGTTGAGGGCCCCTATCTGAACTAAGGGGGTGAGCGAACCGGGGAAGATCGAGGGAGACTCGACTGATTCTCTGACTCTCCATAGTCATAGTCGCAAAAAACGGCACCCTGAACTATGTATATGGCGACGTGCCCTATAGAGGTATATAGCTCTCGACCACCGGAGCAGCATCTCATCCCATCTCATCCGGGAGCCGTGGGAGCCCGTCGACTGAACTATGTATAGATAGCCATAGCCGCCCCATAGTTCAGATAGGGGCCGACGGTACCATCTATCTCCTCCCGGAACTAAGATCCCCAATGCCTATAATCGGGGATTCTAGTGGGAGATATAGTTATAGCCTCCCACCCCCCCTACAATTCTATGGGCTATTCCGGTGCATTTGGGTGGGGATTCTAGTTAGACCTCCCACCCGCCCGGCACTATGGAGGAGGGGCCCTCCCACCCCATGTGACGTATGTAATCGGGGTGGGGGA | |||||||||
gi|93295066|gb|BW996768.1|BW996768 BW996768 Cryptomeria japonica vegetative bud Cryptomeria japonica cDNA clone CR1033, mRNA seq GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): ACCCTGTGCAGCTTTTCCTTCTACTTCATCCTGGCCTTTGAATCCCGTTGCAATTAATGTTATACTTACTTGTCCACTGAGTGATTCGTCTATAACAGCTCCAAATATTAGATTTGCATTAGGATCCACAAGGTCATATATCACCTCAGCAGCAGCATTTACCTCAAACAATGTCAAATCACTTCCTCCAGTGATATTCCACACAATACCAGTTGCTCGCTCAATACCAATATCTAGTAAGGGTGACTGAATAGCATTAAGAGCAGCATCTCTAGCCCTTGTCTTCCCAGTTGCAATGCCTATTCCCATCAAAGAGGACCCAG | |||||||||
gi|190397158|gb|BY897144.1|BY897144 BY897144 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL002_C01 3', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): AGATTCTGGGCAAATATTTATACGCTACTGTTTTTATTCCATAACCTTTTTATGCAAAATTACAACAAGGATCTATACATAGAAAGCACAAGCTCTGCGCCAAACGAGACGACATAACAAAAATTAAAAGACACTAGACTCTGAAACACAGCTATTATGAAGCTTCCTTTTAGTGTGGAACTAAGATTCCCACAGCAGAAGCATCCTTACAAGTAGATTAATAATAATATTGCTCTTGTCTGTAGTGGGGACAGTACTAGAACTAGTGCTAGGCTGATGCTGCTTCTGCTTTGTTATCCTTGATTGATCTGTTGTATTTCATGTGACTCCTGACAAGCTGGCCTGCAGCAAGAGCGG | |||||||||
gi|190366134|gb|BY893835.1|BY893835 BY893835 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL044_K23 5', GGGATGCTGCTGCTGTGGTGG EST sequence (targeted fragment marked with yellow): TCGGGAGCAAAGTAAGAAAGCAGAGCAGAGTTAAAAAAAAGAGAGAGAGAATGGCACAAGCAATGGCTTCAATGGCAGCAGCATTTACGGAGGGTGGTCACATGAGCATCGCCCGCTTACCCGCCACCAGCTCAGCCAAGCCAAGCCTCTTAACAGCCCNGCGNCCCACCACAGCAGCAGCCTCCAATGCGCCGCCACTGAATCCGCCGCCGCCGCCGCCAATCAGAGCAGCCGCCGCTCCCTTCTGGGGCTCCTCGCCGCCACTGTATCGGTGGCGGGAGTGACCAACAAAGCTCTGGCGGCGGCCACATCCATCAAGGTCGCGGGCCCCCCTCCCCCCTCCNGGCGGCCTGTCTGGAACGAAGAATTCGGATGAGGCTCGAGACCTGGATTTGCCGCTGAAGGAACGGTTTTATCTGCAGCCGCTATCGCCGTCAGAGGCCGCCGCCAGGGCTAAGGAGTCTGCGAAGGAGATCTTGAATGTGAAGGATCTGATAAACAAG | |||||||||