| mature miRNA: GTACTCCCTCCGTCCCAAAAT species: Trifolium pratense database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86099497|gb|BB910706.1|BB910706 BB910706 Trifolium pratense three week-old plant Trifolium pratense cDNA clone RCE09713, mRNA GTACTCCCTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): AAAACAACATTGAATACATTAAATATAAAGAGAAAATTAGTAATAGTTTAACACAAGTCAAACAAAATTATTACTCCAACAACTTTTCTTAATACTCGTGTTTTTTGGTAGGGGTTCCTATACTTAGGGACGGAGGGAGTAACATATAACAGCTAGCACATTATGAAAAAAATATAAACTCAAGAAAATTGAAGCTGCTGGAGTAATAATGGAGAAGTCGAAAACCCGGAAATTAATCAGGTTCATTCAATGTTTAGAAACCAACTTTTTAGTAATGAATGGAGCAAAAATCTGAAAGGAAGGGCGCAAATAGTAAACCTCAGAAGCCACTACTTGATGATGCATTTCCAGATCTGAGACCCGAAGTGGATCCGTTGCTTGTTTTGCTGATAATCCCTTTTCCAAAATATTCAGCAATGACAGAAAACCCATCTGTGGAGTTCTTAACTTGCTGGAAAAATCTGTCCTGATTCTTAGAATTTTGCTCTAAATTTCTTTTCATTTCTAAGACAGACTTATATTCTGGGGCACACTCGGGGCATTCTTTTTCATTATCGCCAAGGCACCGCAAATG | |||||||||
gi|86097299|gb|BB908508.1|BB908508 BB908508 Trifolium pratense three week-old plant Trifolium pratense cDNA clone RCE07129, mRNA GTACTCCCTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): GTTTTTGTTTTTGTGGTACACGATTATAGGGAAATTCTACAATGTTACTTTTATTATTATAAGTGGCTTATGACAAACACTTACGTATTGTTTGACCTATGTGGCACATGTATTTGGGCCGCCTCTAGTTTTTAATATATTATATGCTAAATTTTTACATCAAACATACTACTCCGTCCCAAAATATAAGCAAAAGGAGGTCAACAAAAGTGAATGTATCTGGACTAAATTTTAAACCAAATACATCAATTTTCATTGACCAATTTTTGCTTATATTTTAGGACGGAGGGAGTATTATACTAGCGTGCCTTTATAATGGGGCAAATAACCCTTTTGGTCTTTGGAACTGTATCTCGATATCACATTCGTCTTTGAATGTATTGAAATTGCAATTAGGTCCCCAAGTTTTTTAGGTAGTCATTCTGGTCTTTATTAAGTTTTTACTTCAAATTAATATATTCAAACCGAGCCACAAACACCCTTATTTATTCATATATAATTTATCAAAGAAGCGTGTTCAATACCTTGATATTATCTATGAATTCGTTTACTAGATCCGGCA | |||||||||
gi|86112307|gb|BB923516.1|BB923516 BB923516 Trifolium pratense leaf Trifolium pratense cDNA clone RCE31102, mRNA sequence GTACTCCCTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): TGCTAGTTTTCCTATTATACTCTTAACTATTTATTACTCTCTCTTCTTTCAATTCTTCAATTTATCTTTCCTATACCATTAATGAAGGACAATTTTGTAAACTAACTCATAATTTCTCTTTTTCATACAACATTAATTACATTTCTTAATTTGTGTAATTTGCCCAAAGTGACTTATATTTTGGAACGGAGGGAGTAATATTTTTCTTTTCTACTTTATGTAATAGCATAATAGGTTAGCTAGTGTGAAATTGTGTTTTAGCTGTCATGTGTATCTTGCTGTTATTTCAGTTATGAGAGTAGGCATGACTTTCTCGTTTCAGTCATTAACTGATTGTAGTTTCATATTTCAGACTATCATTCATGCCGGCCTACTCAAAAAGGGTTTATGTTCTGTTCAGGATGAGAGTGCAGGTCAACTTGTCATCCTTGATCATAGAAGGAATAACTGTGAAACGAAACTATAATATCTAAAGTCTTGCTTTTCTTGTTTTACCTTGAACGATAGGCTATGCTATATATTAGTAGGAATTTAGTTTCTTCATGATATTCTCTTGTGCGCATGATAGAGTATACGAGTCA | |||||||||
gi|86125932|gb|BB937141.1|BB937141 BB937141 Trifolium pratense three week-old plant SSR-enriched library Trifolium pratense cDNA GTACTCCCTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): CCGTACGCGGCGACTCTGAGGATCTACTAGTCATATGGATTCGGTACAATAAATAAGGAGAAGTTTGTTCGTTCTACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCAGAGAGATGAGTGAGGAAGCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGCCACCGCGGTGGAGCTCCGGGCCCCCCCTCGAGGTCGACGGTATCGATAAGCTTGATATCGAATTCGGCACGAGGGCTGAGAGAGGTTATAGTTGTTATAGTAACAGAATTTTGTGTTGATGGATTCACAGCGAGGACATTTCAAGACTGGTTGGGTCTGGTTGTTGTTGTTGTTTTGGTTTGGTCGGAGTCTCCGGTCAGCGGCTCCACCGCCGCCGAAGAACCTGGTACCGCCGGCTCCGATGGAATGTATTTCCTGCATTTGTGGATGGAGGAAGGAAGGAATGAAGGGAGGATGAGTGGTTGGGATTGAGAGATGAGAAGAGAGATCACCTGAGAGTGGTGTGTGTCAGTGTGGTAATGAATGTTAATATTGGGAGGGAGGGAGTGTGGAGAAGAAAGTAGAGAGAAAAATGAGAGAGGAAAGAGTTTGCCTGCAGCCCGGGGGATCCACTAATCGGATCCCCGGGTACCGAGCTCGAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCACAGTTGCGCAGCCTGAATGGCGAATGAAATTTGTAGCGTTAATATTTTGTTAAAATTCGCGTTAAATTTTTTGTTAAATCAGCTCATTTTTTAACCAAATAGGCCGGAAATCGGGCAAAATCCCCTTATAAATCAAAAAGAATAGACCCGAGATAGGGGTGGAGTGTTGGTTCCAGTTTTGGAAACAAGAAGCCCCCTTATTTAAAGGACGGTGGGCCTTCCAACGTTCCAAAAGGGCGAAANAACCCGGTCTTATTCAGGGCGGATGGCCCCCCTTACGGGGAACCCCTCACCCCCTATTTCAAGTTTTTTTGGGGGTCGAGGTGGCCCTTAAAGCCCTTATATTCGGAACCCTCTAAGGGGGCCCCCCGTATT | |||||||||
gi|86104428|gb|BB915637.1|BB915637 BB915637 Trifolium pratense leaf Trifolium pratense cDNA clone RCE20940, mRNA sequence GTACTCCCTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): CTTAATAAGTGTGATTTTTTTATTTTCCCTTATAATTTGGGACGGAGGGAGTACTATATAAAAATAATTCCGACATTTCTTGTGAAGGAAAAATAATATGCTTTTTTTTTATGAATACATGATGGTTTTAAAGGTTTCTTTGGTAGTTTAACCAAACAGCTGGAATCCCTGTTACAACACCGGTTGAGCCATTACCGGCCACCGGAACTCCATTCACCGCCGATAACATCGAATTGGAACAAGAATTTTTTTGGGACACTTTTAGCCTAACAGAAATATTCACAACCCCATTTCTCCTAACTCTATTATCCCACAACCTATAACTTAAAAATTGCAATTGATTTTCATGTACATATCCTCCAATAAAATCTGAAATCGGTATTCTAGCTATTCCAACACTAGTACTACTATTTGCTCTTGTTTTGTACTTCACCTCTATTGTTATGAACCTTGCATGAAATGGCACGTCCATAACTAACTTCTCATTCCATGAAGGGTAACTTCCACCTTTCAAATCAAGTTTAGTGGCGTTCAATTCATTGTTGCTTCCATCGCATTGA | |||||||||