| mature miRNA: TACTCCCTCCATCCCTAAAAT species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|257190893|gb|GT051055.1|GT051055 CLS_cLiFproots_7a4_1_n22cLibkit5LD_G11 CLS_cLiFproots_plant Festuca arundinacea cDNA clone 7 TACTCCCTCCATCCCTAAAAT EST sequence (targeted fragment marked with yellow): CACTCGGAGCAAAGTTAGCTCTACATGGATTGGCGCTGGCGAAAGCTATCTCCATGCATGCATGTGGGTATAATGGTGAGACGAGGTGAGCGGTTCAGAATGCAATTAAGGCTGGCGTATCATTAAAGGAGTGAGTGCGGCGTGGAGTGTTATATTTGGAATATTAGAGGGGGAAACAGGGGTGTGCTCTGTTTTATGGTATTTTTAGAGAAGTTCCCATACTAAAGTGTAGTTTTCTTAAATTTAATAATATTAATCTAAATATGCCCATTTGTGTTCCAAAAGTACCTTACTGGATTCCCGGAGGTGAAGAAGCGACTTGAGTTGACTTATACAATGTTATGTATCGAGAAAGGACACTTTTTTTAGGTCAAGAGATTCGTTGCGAGATCACGAATCATATTCCGGGTCTCATGGTATATCTCAGTATAGAAGATGGATGTTTTATGGTATTTTTAGAGAAGTTTCAGGTCTTGTTTTTAGGAATGGAGGGAGTGGAGGGAGTACT | |||||||||
gi|74436512|gb|DT692687.1|DT692687 s13dFA27A09HS069_389387 Tall fescue, Festuca arundinacea Schreb, Heat-stressed shoots Festuca TACTCCCTCCATCCCTAAAAT EST sequence (targeted fragment marked with yellow): GGCACGAGGAATATACGCAATATATTTTGGAATGGAGGGAGTACACTCGACACATTACAAGGAAAATCATTCTTCAGATCGACACGATCCAAGCACAAAGAGGGCAAGATACATTTTTCTTCTGGAGAGGATGATTTCAAGATACATACATGCATATACATCGAGCAGCCACACGCCAACACCACAAAAACCAGTACATACCACAAACGTACGTACAACCATCTCGTGCCGGTACGTGGTATGCACGTACACGCGCCGTCGTGGGTACGCGAGGATTAGGTGGCGTGGTCCTTGAGGATGTCGAGGGTGAGCTCGCTGGGGTCCGTGGCCTGCACGTCGATCTGCACGCCCTCCAGCTCCTTCTTGAACCCCTCGTTGGAGCTCGCGTAGATCATCTTGCTCTTCACCTCCGCCGTTGCCGGCGACCTGAATTGTTTACACAACAACCGCACACCCTCAGAAAACCGGCCTTAACGTAGTACTAGTTCAGAACAGAATCCATGCCACACAGCTAGGCTTAGGCACGTACCAGGAGATGAAGAAGATCTTGCTGCGGGGCGCCTCGCC | |||||||||
gi|74438064|gb|DT694239.1|DT694239 s13dFA40D04HS032_438092 Tall fescue, Festuca arundinacea Schreb, Heat-stressed shoots Festuca TACTCCCTCCATCCCTAAAAT EST sequence (targeted fragment marked with yellow): GGCACGAGGGTGTTTCTATATTTCTTCCTTCTTGTTTGCATTGGGGCTTCAAAAAGTAGAGTACCAGGCAAGCCAATCTATAAAACAAAATTCAATTAAATGTCTATTTTTTTCAAGGTTTTTTCCTAAGTCAAACTTTCTCAAGTTTGACCAACTTAGTGGAAAGTTGTGGCAATATCTATGACATGAAATTAGTATATTATGAAACTACATTCCAGAATGCATGTAGTGACATTAATATGGTGGTGTAAATATTGCTATTTTTTCTATGATGTTGGTCAAACTTAACAAAGTTTGAGTTAGGACAAACCTAAAAGTGCACTTATTTGTGGATGGAGGGAGTAGGAGCTTCTGTAGTGTATTGTATCAGCGTTGCTACATAGCCATGCTACCTTTGAGAAAACCAATCAAACTTTTTTTTCCCACTGTGTTGAGCTGGTTTTGCCTTTGAGTGGGTTCCAAACCATGCACAGTAAACGGAAATGAGATATTAGACCCCGTTCACCTCTACCCACAGTCCCTA | |||||||||
gi|74450260|gb|DT706435.1|DT706435 s13dFA03C06ST038_100022 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD TACTCCCTCCATCCCTAAAAT EST sequence (targeted fragment marked with yellow): GCACGAGGAATTATATATGGACGGAGGGAGTACTAATTTTGTGGACATATTATATAAGTACAAATCATAGTCAACGTTGTAAGTCATTGAGCAGTGAAAATCAAGGGCGCCTTATATTTTGGGATGGAGGGAGTAGTAATTTTCCCTCTGTATGGATTTCCAACACCCCTTTGTTAAAATGCAGTACTACTACTACTAGAAAATAGCGTCATTTTTTCACGTCTCTGGTGCATTTATAAGTTGTTACTGCATCTATGTTTGTAAACTATGCTTCCTGATCCTGAATATTTATTACTCATTTGCATTTAGTATGATCCTGAGCCAATCGTTGGATTTTGCTCCATGTCAGCCATCCTAGAAAAGTTAAATATTTAGTATGTACCCCTGCAGAAG | |||||||||
gi|257191015|gb|GT051177.1|GT051177 CLS_cLiFproots_8a1_1_c15cLibkit5LD_B08 CLS_cLiFproots_plant Festuca arundinacea cDNA clone 8 TACTCCCTCCATCCCTAAAAT EST sequence (targeted fragment marked with yellow): AATCATGATGTTTGTTGATGAAATGTTCAAAAGAGTGCTAACTATTCGAGATTTAACTATCACAGTTCATCTGTGCGAATCAGCATGCATGTGTAGCTTTTTGTTTCTTGCAATTAGTGCAAATTCCTTAGGAGAAATAGAGATTATTTTATTAGAATCTGTGGCATGTTGACATCAGATCTGCACTTACCTTTAGGTTACAACCCTTCAGTTAGGGGTTTAGGGGTACATACCCAACCCTTCAGTCATGGAACCAACACCTTTTTCTCTACACGAATATATTTCAAAGAGAAGATTCAAGATTTCACACAGTAGGGTGTACAGTTGTCAACTAAGCCGCAATACCTTATAAACAATCAATGATACTACCTCTGTCCATAAAAGAATGTCGCAAAATTGTCTAAATTTAGATGTATCTAGACATTATTTAGTGTATAGATACATCCGAATTTAGACAAATCTTCGACATCCTTTTATGGATGGAGGGAGTATTTCCAACTGAAGATAGTGATCGTTGCTCCTTCAATAATCTACCAGTTTACTTGTTTCAGATTGTTAGCTTGATATATGGAATGATGAAGTTAGGTACTTTGTAGAATCTCTCTCCTCTGTACATAGCTAACCTGATGTTTTACAGGATCTTGTATTAACTAGAGAGTATACACATGTGTTGGACTGGCAGAACATACAGTCAGTAGGATAAGTTTAGTACCTTGTAACTCACTGTTAACATGGTATATGTCTAATAATATGACTGTTTTTCTTAACAGTCAAGACTGGACCTAGTTTTACTGAAGCGGCTATGGGACGGCTTGCTCAAGGAACTAAAGTCTTAGCAGAAGGTGGCTATGAGAAAATATTTAAGCAGACTTTTGAGATTCTTCCGGATGAGCAGCTGAAAATATCTTATGCATGCTATCTATCAACATCTGCTGCTCCTGTCATGGAGT | |||||||||
gi|257183678|gb|GT038454.1|GT038454 CLS_cLiFproots_25a4_1_d18cLibkit5LD_B09 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TACTCCCTCCATCCCTAAAAT EST sequence (targeted fragment marked with yellow): ATTTAGACAAATCTGCGACATCTTTTTCGGGATGGAGGAAGTACACCATATTTCATTTATGTTTACCTGATATACAGTAGGGTGTAATTAATGAGTTGTCTATCCAACCCTTAGTTTTTTTCTTGAATATGTTGGGATGCATAATAGTGAAATTTACCAAGTTGGCCGGGATGATTTAAGGCTGAAGCTAAAAGTCTTGCCATAGAACAGCAATGGTGGCAGAGAACAGAATGAAGTGGATCTCCAGGAAAAGCTTTCTTAGAATTCAAGTAATCTATAGGGATATGAGGCAAGGGCTTGATCTAGAATCAAGGTCAAGATGTGTGTAACATTCATGACCACAAGAGAAGAAGGGGAGCAAGTCATGTTGACAACGAAGAAGAAGAGGAGATGCCAAGTAGAAGGCAAGAACACGAAGGGGAGGAGGGGGAAACTGGAAAGGTGATGAGCTTGGTGCCGATGAGGGCATGAACTAATGCCGAAGTCGAAGACAGTGACCAGTAGCAGTGGCAAGGACATACAAGAGACATCCCGCTGGTATGGGCGCCAGAAAATGTAAATAATATTATGTCAGGTATTTGTAGATGCAAGTTTCATGATCTCAGTTCTTATTGCTCGCTTCTAGAAATTTCCAGTACTAACCTGCCAATTGGTCATATTAAGCCTTGACCCCGTATGTACGCACATATTGATCTAGGTGCATGGTATTCATCAATGAAGTCAAGCAAAACTTTATTATTTTCAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|74453226|gb|DT709401.1|DT709401 s13dFA56C02ST018_400311 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD TACTCCCTCCATCCCTAAAAT EST sequence (targeted fragment marked with yellow): GGCACGAGGGTTAGGCTGATTGGACCATTCTATGGTTCTGAACACAGTTACTAGCATGATATGAATAGATTTGTAAGATGTGCTACTGATCGGATATAAAAATGATTAAAATCTCAAATTCTAATCGTGCTATTGCTTCTGAAGAACACTTACAGAGTCCAATTTCAAAATGGTTATTTCTTCATCTCAGCATTTGATGACTCTTAAAACCCCCTTTTTGTAGGATGATTGGAGATGTCACCCTTTAATTAAGCTTGATATCATTGATACATGTTCTGTTTTTACGATTTGCTACTAATCCAGATTAAAAAAATTACTCCCTCCGTCACAAAAAGGATGTCGTAGATTTTTCTGAATTTGAATGTATCTATACACTAAACCGCGTTTAGATACATCCAAATTTAGATAAATCCGTGACATCCTTTTCAGGATGGAGGGAGTATTATTATTATGAAATATTTAACTGCATATAATAGTGATGCTAAATAACACCCACAGTCCCCTAATTCAGATATGTTATTTCTTTATCTCAGCTTTTGGTGCCTCTTGTAAGCGCATACCGCTATG | |||||||||