| mature miRNA: TAGCCAAGGATGACTTGCCTA species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225400294|gb|FS197693.1|FS197693 FS197693 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3127M08 TAGCCAAGGATGACTTGCCTA EST sequence (targeted fragment marked with yellow): ATGCCATCATTTATCCTCAAATGGTTGGTGTCACCTCTACTAGAGTTGCACTTCCTCTTGAATGCACCGAGAGCTTGCCCATTTATGTGAATGCGAAACAATACAGTGCTATTCTCAAAAGGCGACAGGTCCGTGCCAAGCTAGAGGCTCAAAATAAGCTTGTCAAAGACAGAAAGCCATATCTTCACGAGTCTCGACATCGTCATGCAATGAAGAGAGCTAGGGGTTCTGGAGGACGCTTTTTGAACACAAAGAATATGCAGGAATCCAAGCCTTCATCTCCAATGCACGACAGAAATATCTTTAAGCGACAGGCAGGTGGCAACTTATCTAGTTCCATGGTTCAGCACTCAGAGAGTGGTAGTTGGGGGACTTCCACCCAATCTGGTTCTGATGTGACAAGTATCTTCAGTGGTGACAACATGTTCCAGCAACCAGAGTTCAGAGTCTCTGGCTTCCCTTTTCACATTCAGGAAGCTGANGACTTCCTGCATGTTGGAACCTGACAGCACACTTGTGTTATCCATGGTGGCGGTGCCAATACAGGCTGCATTACAAATGCATTCTTATTGGTGCACACAAATGGATAATCGGCAGTTCATCCTTGGCTATGTTACTCTTCCTTTTCCTGAATTGAAATCATGAACACTTTTCCT | |||||||||
gi|16243260|gb|BI929424.1|BI929424 EST549313 tomato flower, 3 - 8 mm buds Solanum lycopersicum cDNA clone cTOB28J10 5' end, mRNA TAGCCAAGGATGACTTGCCTA EST sequence (targeted fragment marked with yellow): ATTTATGCTCGTCGTGTTCTTTATATGGACATCCGAGGCCAGGGGTCCATTCCCTTGACCCGTACTGATGAGAATTTGACTCCACGAGAAATTGAACAAAAGGCTGCTGAATTAGCCTATTTCTTGCGTGTACCAATTGAAGTATTTTGATAAATTGAGAATCAGAACGTTCATTCAATTAAAGAAAACGTATATGAAAGAACCATAAAACGAAACTCTTTTTATGGTCTTTATGTGCACGCAATTCAATAACAAATAACAAATCGAAATAATAGATTCATCTCAGACGGCAAACCATTTCGAAAGCAAGAATTTTTTTTAGTTCAATATTTGTTGGAATTGACACTTTAGATCCAGATAGATCGTATCTTGTAAATTTGAAATTCTTTCTTTTGTATTCTTTAATGACCAACAATTGGATTTCTTAATTAAATACTGAGAACTAGCCAATTTATCCTTTGCTAGTCATTTTTTTTTTATCATCCTAATATCTTTCCCTCAATTATTCTATTCCTGACTATGGGTAATCAATGAAATTTTTTCGAAATATTGGATATTTTGATAGCAAAGGAGTTCTTTCGTCTCAAAATCTGAATAATATTCATTACTTAGAGTGGTTCTTTCGATCATTCATCGAAAGGATACACTTGATTTTTAATTTGACCAATTGAGATATCAGGAAACAATATTCTCAATTTCTTCATTCGAAGTGAATTCTTAGCCCTATTCTGTATTCTTCTAGATCAAAGACTAACCACCAATCACAAAGAAA | |||||||||