miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCACTCCTCTTCTTCTTCAAT
species: Eschscholzia californica
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|67204134|gb|CD481295.2|CD481295 eca01-40ms1-a09 Eca01 Eschscholzia californica cDNA clone eca01-40ms1-a09 5', mRNA sequence 

TCACTCCTCTTCTTCTTCAAT
|||||| |||||||||||  .
AGTGAGTAGAAGAAGAAGAAG

EST sequence (targeted fragment marked with yellow):
CTCCTCCTTAAATAAGGCGTTTTCTTTCTCTCTCTCTCTCTCTCTTCTCCTGTGTAATCAGTAATTTCTTCAACGTAAATTAAACGAAGAACGGCAGGAGGGAAACCAGAGCTTCCAAGGATTTTGATTTTGGGGCTTATTGTTTCTCGTCATAGGAATGAGATCGAAGTGTTTGTGAAATTAAAACGGAGAGATAGAGAGAGAAATTAAGATAAGAAGAAAAACGAAGAAGAAGAAGAAGATGAGTGAGAGCGGGAGATTCCAGCTAGGAACAATAGGGGCATTGGGTCTCTCTGTGGTCTCCTCTGTGTCGATCGTGATTTGTAACAAGGCCCTAATTAGGTCTCTTGGGTTCCATTTTGCTACTACTCTGACGAGCTGGCATCTATGGGTCACATTCTGTTCGCTTCATGTTGCATTGGGGGTGAAACTGTTTCGACACAACCCATTTGATGCTAGAGCTGT


gi|67202014|gb|CD476796.2|CD476796 eca01-33ms1-c11 Eca01 Eschscholzia californica cDNA clone eca01-33ms1-c11 5', mRNA sequence 

TCACTCCTCTTCTTCTTCAAT
|||||| |||||||||||  .
AGTGAGTAGAAGAAGAAGAAG

EST sequence (targeted fragment marked with yellow):
GGCGTCTTCTCTCTCTCTCTCTATCTTTTCTCCTGTGTAATTTCTTCAACGTAAATTAAACGAAGAACGGCAGGAGGGAAACCAGAGCTTCCAAGGATTTTGATTTTGGGGCTTATTGTTTCTCGTCATAGGAATGAGATCGAAGTGTTTGTGAAATTAAAACGGAGAGATAGAGAGAGAAATTAAGATAAGAAGAAAAACGAAGAAGAAGAAGAAGATGAGTGAGAGCGGGAGATTCCAGCTAGGAACAATCGGGGCGTTGGGTCTCTCTGTGGTCTCCTCTGTGTCGATCGTGATTTGTAACAAGGCCCTAATTAGTTCTCTTGGTTTCCATTTTGCTACTACTCTGACAAGCTGGCATCTATTGGTCACATTCTGTTCGCTTCATGTCGCATTGTGGATGAAACTGTTCGAACACAAACCGTTTGATGCTAGAGCTGTCATGGGATTTGGAGTACTGAATGGGATATCCATTGGACTTGTGGATCTTAGTCTAGGTTTTAACTCAGGCGGTTTCTACCAGATGACCAAGCTGGCTATCATCC


gi|67201998|gb|CD476765.2|CD476765 eca01-27ms1-h07 Eca01 Eschscholzia californica cDNA clone eca01-27ms1-h07 5', mRNA sequence 

TCACTCCTCTTCTTCTTCAAT
||||||||||||.|||||  .
AGTGAGGAGAAGGAGAAGAAG

EST sequence (targeted fragment marked with yellow):
CACACTTGAAAGGCCAATTTGGGCATTTTGAAATGTTTATCCCCTCGAACGGCCAGATCACTCTTTTAGATTAAAACACAATAACAACCGTTGGATATCTTAGGTTAATTGTTACAAACCCTACAAAAACCTTATTTCTCTGATCTGAAGTAGCTTCATAGAGGTAGAGAGGCGGACTCGTCGACTCCAAAACCCTAATTGATTCAGAGTTTGCAGAAAGTAACAAGATGGTTGAAGAAGTCAAGAGCGGGCACGTTGTCCCCGAGTCAGTTTTGAAGAAGAGGAAGAGGAGTGAAGAATGGGGAGCTATCACAGAAGCAAGCACTTGTAGCTGCTAAGAAGAAGAATGCAGAGAACAGGAAGCTTATTTTCAAGAGAGCTAAGCAGTACGCAGAGGAGTACGATGAGCAGCAAAAGGAGCTGATACGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTTTATGTTAACCCAGAAGCTAAGCTGCTCTTCATTTATTAGAATCCGTGGGATCAACGCCATGGACCCAAAAT


gi|67008092|gb|CD480480.2|CD480480 eca01-6ms1-c08 Eca01 Eschscholzia californica cDNA clone eca01-6ms1-c08 5', mRNA sequence 

TCACTCCTCTTCTTCTTCAAT
 ||||| ||||||||||| ||
TGTGAGTAGAAGAAGAAGCTA

EST sequence (targeted fragment marked with yellow):
CTCTTTCTCTCTCTTCATCTCTATCTCTCTCTCTCTCCCTGAGACGACGACGGTAACGAAATCTAGGGTTAGGGTTTCTAAATTTCCAGGGGTTCGGTTCGATAGGCGATAGTAAAAGATATCGAAGAAGAAGATGAGTGTAGATCAGATTGCATCCAACTCCCATGGCAACCTAGACGAGCAGATTTCACAGCTTATGCAGTGCAAGCCATTATCTGAACAAGAGGTCAGGACATTATGTGAAAAGGCTAAAGAGATATTAATGACCGAAAGCAATGTCCAGCCTGTGAAAAGTCCCGTGACAATATGTGGTGATATCCATGGGCAGTTTCACGATCTTGCGGAACTTTTTCGCATTGGAGGAAAGTGTCCAGATACAAATTATTTATTTATGGGGAGACTACGTGGACCGTGGGTATTATTCAGGTGAAACTGTGACGCTCTTGGTGGCCTTAAAAGTGCGCTATCCGCAGAGAATACTATTCTCAGAGGAAATCATGAAAGTCGTCAGATTACACAAGTTTATGGGTTTTATGACGAGTGCTTGCGAAAGTATGGAGTGCTTATGTGTGGAAAGACTTCACTGACCTTTTTGACTATTTTCCTTTGA


gi|42638094|gb|CK747671.1|CK747671 eca01-12cs2-b12 Eca01 Eschscholzia californica cDNA clone eca01-12cs2-b12 5', mRNA sequence 

TCACTCCTCTTCTTCTTCAAT
||||||||||||.|||||  .
AGTGAGGAGAAGGAGAAGAAG

EST sequence (targeted fragment marked with yellow):
CCAAAACCCTAATCGATTCAGAGTTTGCAGAAAGTAACAAGATGGTTGAAGAAGTCAAGAGCGGGCACGTTGTCCCTGAGTCAGTTTTGAAGAAGAGGAAGAGGAGTGAAGAATGGGAGCTATCACAGAAGCAAGCACTTGTAGCTGCTAAGAAGAAGAATGCAGAGAACAGGAAGCTTATTTTCAAGAGAGCTAAGCAGTACGCAGAGGAGTACGACGAGCAGCAAAAGGAGCTGATACGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTTTATGTTAACCCAGAAGCTAAGCTGCTCTTCATTATTAGAATCCGTGGTATCAATGCCATGGACCCAAAATCTAAAAAGATTTTGCAGCTTCTGCGTTTAAGACAGATATTTAACGTTGTATTTCTGTAAGTAAACAAAGCAACAATGAACATGTTACAGAGGGTGGAACCATATGTTACTTATGGATACCCCAACCTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGGTATGGAAAGCTGAACAAGCAGAAAACTGCTTTGACTGACAAT


gi|67198421|gb|CD481782.2|CD481782 eca01-12ms1-b08 Eca01 Eschscholzia californica cDNA clone eca01-12ms1-b08 5', mRNA sequence 

TCACTCCTCTTCTTCTTCAAT
||||||||||||.|||||  .
AGTGAGGAGAAGGAGAAGAAG

EST sequence (targeted fragment marked with yellow):
GTCAAGAGCGGGCACGTTGTCCCCGAGTCAGTTTTGAAGAAGAGGAAGAGGAGTGAAGAATGGGAGCTATCACAGAAGCAAGCACTTGTAGCTGCCAAGAAGAAGAATGCAGAGAACAGGAAGCTTATTTTCAAGAGAGCTAAGCAGTACGCAGAGGAGTACGACGAGCAGCAAAAGGAGCTGATACGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTTTATGTTAACCCAGAAGCTAAGCTGCTCTTCATTATTAGAATCCGTGGTATCAACGCCATGGACCCAAAATCTAAAAAGATTTTGCAGCTTCTGCGTTTAAGACAGATATTTAACGGTGTATTTCTTAAAGTAAACAAAGCTACAATGAACATGTTACAGAGGGTGGAACCATATGTTACTTATGGATACCCCAACCTGAAGAGTGTCAAGGAATTGATCTACAAGAGAGGTTATGGAAAGCTGAACAAGCAGAGAACTGCTTTGACTGACAATTCAATCATTGAACAGGCTTTGGGCAAGTATGAAATTATATGCATAGAAGATCTTGTTCACGAGATCCTGACTGTCGGACCTCACTTCAAGCGAGCAAACAACTTCTTATGGCCATTCAAGCTTTCGGCACCATCGGGTGGCCTAAAGAAGAAGGGGATCATTACGTTGAAGGTGGTGATGCTGG


gi|42637246|gb|CK746823.1|CK746823 eca01-11cs4-g06 Eca01 Eschscholzia californica cDNA clone eca01-11cs4-g06 5', mRNA sequence 

TCACTCCTCTTCTTCTTCAAT
|| |||||||||||||||  .
AGGGAGGAGAAGAAGAAGAAG

EST sequence (targeted fragment marked with yellow):
CTGCTATCGCCTTCGGTTGTTTCTCTGGAGCAGCTATGTTGGCAAGGCGTCGTGAATACCTATACCTTGGAGGTATACTGTCGTCTGGTGTTTCAATGCTTCTTTGGTTGCAGTTCGCCTCCTCAATCTTCGGTGGTTCTGCTGCCATGTTCAAGTTTGAGTTGTATTTTGGATTGCTGGTTTTTGTGGGGTATATGGTAGTAGATACACAGGAGATAATAGAGAAAGCACACAACGGAGATCTTGATTACGTTAATCATGCACTAACCCTTTTCACTGATTTTGTCGCTGTTTTTGTTCGAATACTAATTATCATGCTGAAGAATGCATCAGACAAAGAGGAGAAGAAGAAGAAGAGGAGGGATTGTGTCTGAAGCTATGACTTTTGCTTGCTCAAAAGATGGGCTTCAAACTGAAAGTGATTGCTTACATGAAACAGTAAGTTTGCTCATAAGTGCGTTTTCAAAAAAAAAAAAAAAA


gi|42642614|gb|CK752191.1|CK752191 eca01-6cs2-g04 Eca01 Eschscholzia californica cDNA clone eca01-6cs2-g04 5', mRNA sequence 

TCACTCCTCTTCTTCTTCAAT
|| ||||||||||||| |||
AGAGAGGAGAAGAAGACGTTT

EST sequence (targeted fragment marked with yellow):
CTTTCTCTCTCTACCTCCATTAACAGTGTTTCTAGGGTTTATTTGATTGAACAAACAACATCATGTCTCTTAGACCTAACGCTAGAACTGAGGTTAGACGGAACAGATACAAAGTTGCCGTCGATGCCGATGAAGGAAGAAGAAGAAGAGAAGATAATATGGTTGAGATTCGAAAGAATAAAAGGGAAGAAAGTTTGCAGAAGAAGAGGAGAGAAGGTATGCAACCACAACAATTTTCGTCTTCCATTCAAGGAAACAACGTCGTTGAGAAAAAGCTTGAGAGTCTTCCTTCAATGGTTGCTGGGGTTTGGTCAGACGAAAAAGAGTTGCAACTGGAGGCAACTACACAGTTCAGAAAACTACTTTCTATTGAACGTAGGCCTCCAATCGGAGGAGTTATTCAATCTGGGGTTGTTCCTCGTTTTGTGGAGTTTCTTATGAGAGAGGATTACCCACAGCTTCAG