| mature miRNA: TGAGAGGTTAAGGTTGATGGG species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|56919980|gb|CK644317.1|CK644317 si.01.N4.5 MCol1522 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TGAGAGGTTAAGGTTGATGGG EST sequence (targeted fragment marked with yellow): GGAAGAAGAGAAAGTGTTGTCAATTGTTTCCATTTGGATATGTCGCTGCTTTCAGATCTCATCAACCTTAACCTTTCAGAAACCACCACACAAGATCATCGCCGAGTACATATGGATTGGTGGATCCGGCATGGACATGCGGAGTAAAGCAAGGACACTTCCTGGTCCAGTTAGTGATCCTTCAGAGCTCCCCAAGTGGAATTATGATGGTTCCAGCACAGGGCAGGCTCCTGGAGAAGACAGCGAAGTCATCATATATCCTCAAGCTATTTTCAGGGATCCATTTAGGAGGGGCAACAATATTCTTGTGATGTGTGATGCTTACACCCCGGCTGGTGACCCAATTCCAACAAATAAAAGACATGCTGCTGCTAAAGTCTTCAGCCATCCTGATGTTGTTGCTGAAGTGCCCTGGTACGGTATTGAGCAGGAATACACCTTGTTGCAAAAAGATGTTAAATGGCCAATTGGGTGGCCTGTTGGGGGTTTCCCTGGTCCCCAGGGGCATACTACTGTGGTGTCGGAGCTGACAAGTCTTTTG | |||||||||
gi|182641071|gb|FF536450.1|FF536450 CASRO57TF CASR Manihot esculenta cDNA 5', mRNA sequence TGAGAGGTTAAGGTTGATGGG EST sequence (targeted fragment marked with yellow): GGACAGACAGGAAAGGAGGAGGAAGAAGAGAAAGTGTTGTCAATTGTTTCCATTTGGATATGTCGCTGCTTTCAGATCTCATCAACCTTAACCTTTCAGAAACCACCGACAAGATCATCGCCGAGTACATATGGATTGGTGGATCCGGCATGGACATGCGGAGTAAAGCAAGGACACTTCCCGGTCCAGTTAGTGATCCTTCAGAGCTCCCCAAGTGGAATTATGATGGTTCCAGCACAGGGCAGGCTCCTGGAGAAGACAGCGAAGTCATCATATATCCTCAAGCTATTTTCAGGGATCCATTTAGGAGGGGCAACAATATTCTTGTGATGTGTGATGCTTACACCCCGGCTGGTGACCCAATTCCAACAAATAAAAGACATGCTGCTGCTAAAGTCTTCAGCCATCCTGATGTTGTTGCTGAAGTGCCCTGGTACGGTATTGAGCAGGAATACACCTTGTTGCAAAAAGATGTTAAATGGCCAATTGGGTGGCCTGTTGGGGGTTTCCCTGGTCCCCAGGGGCCATACTACTGTGGTGTCGGAGCTGACAAGTCTTTTGGGCGAGACGTTGTCGACTCACACTACAAGGCCTGTGTATATGCTGGAATCAACATTAGTGGTATTAATGGAGAAGTGATGCCTGGCCAGTGGGAATTTCAAGTTGGACCTGCAGTTGGTATCTCTGCTGGAGACGAATTGTGGATTGCTCGCTACATCTTGGAGAGGATTACGGAGATTGCTGGAGTTGTCCTTTCTTTTGATCCCAAGCCAATTCAGGAGACTGGAATGGTGCTGGAGCTCACACAAACTATAGTACAAAGTCAATG | |||||||||