| mature miRNA: TGCAGTTGTTGTCTCAAGCTT species: Saccharum hybrid cultivar SP70-1143 database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|34961102|gb|CA107795.1|CA107795 SCRUHR1077F06.g HR1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCRUHR1077F06 5', mRNA seq TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): CGCGGAGNCCCTCATCGAGGTCGACTGGACGGAGACGTCGTACTGAACGTGCGTTTAGTTCACCCGCACTCCTGCCTCGGCACGGGCTTCTCCTACCACTTCTCTTTTGTGGTGTGATTGTATCTAGCCCTCATCATAACAATTCATCGGAAGCGGCGCGCCATCGTCGTCTCAGATTGATGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATGAACAAAAGCACAGGTTATGTTATCAGTGAACACATTGGCACAAATTTTAACTGATATATGTTGATAACAGACATGACGTTTAATTGGAATCTTGCAGCATGATACACACACAGCAGCTCTTAGGTACTCCATCCATTCCAAATTATAAGACGTATTGGGTTTTGTAGACACATTGATTTTAATATGTATCTAGACACAGTGTATATATAAATGCATAGCAAA | |||||||||
gi|35226091|gb|CA196636.1|CA196636 SCBFAD1090E12.b AD1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCBFAD1090E12 3', mRNA seq TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): CAATCTAGNATGATTTCTTTAACTGACGAATTAATTGTGACAAAGCTTAAACATGTTCAGCTGCAAGAAGAACTAAATGCACTGTACTGCCAAGAAGAAATCGTCGACATGAGAGAGGCGAAAAACGAAGAAGCATGAAGTGGTGAAGCCTCCCTTTTTCTTACTGCTAGGAGGGGGCCTAAAAGCCACATTATCCCGGGCCCGTGCGATTGAGGCTTGGCTTAACTGGCTGCGTACAAGGACTTGAAGGATCATTTGTTGCTGAGCCAGCCAACTCCGAGGGCAATCGAAAAAACAGCAGTGAGTTTGAAGGAGCGGGGAGACGTCTCTCTCTGTGGGGTTTATGATCGTTGGCCTCGGATTGAACTGTTATGTTTATTCAGTCGACCCGTTGCGTTCGGGTTTGTTTTGTTCAGTGAGTTTTTAGGCGTCTTTGCGATGTGTATTCATTTTGATCGCATTCGCATCTATCATTAAGATGGCTATGACGCCAGCCTCTAATATTAGTAGTAGTAATAGGTATAGCCGTATAGTACCATTGTACTTGTACCTCAGAAGTCAGAAAGACTGGGACAATAACTGCATCGCGTCTATAGACAGCGGAATGCTTGTGTAGCTACTGTATACAAGGGACTGTCCCAGCATAGAGCCTTCGGCTGGGACCCTGAACTAGACTCTGCCTCATGATCAGCTATATGGATCGACATCAAGGCCAAGATTATTTTT | |||||||||
gi|35256241|gb|CA211684.1|CA211684 SCRLAD1102G12.g AD1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCRLAD1102G12 5', mRNA seq TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): AGATCCTCTATACATATTTGATGATAATTTTGGAGAATCAGCACCAACGTTACTTGAAGATTATAGTGTCCCTCATTTATTCCAAGAAGATTTTTTTGATATCTTGGAGTATGACCAACGACCAGCATTCAGATGGCTTATTATTGGACCAGAGAGATCAGGTGCTTCTTGGCATGTTGATCCAGGACTGACGAGTGCATGGAATACTCTTCTTTGTGGCCGAAAAAGATGGGCATTGTACCCTCCAGGAAGAGTGCCTGGTGGTGTCACAGTACATGTAAATGATGAAGATGGTGATGTTGACATTGAAACTCCGACGTCATTGCAGTGGTGGCTTGATATCTATCCACACCTTCCTGAACAAGAGAAGCCATTGGAATGCACACAATTGCCAGGAGAGACCATTTTTGTTCCTAGTGGGTGGTGGCATTGCGTTCTGAATCTTGAGACAACAATTGCAGTGACACAGAATTTTGTAAACCAGTCTAATTTTCAGCATGTATGTTTGGATATGGCACCTGGCCACAGACACAAAGGAGTTTGCCGTGCTGGCTTACTTGCTGTTCCAGGGAAATTCATTAAAGATAATGAAAATCATCCCGCTGTCACAACCAGTGGATGGAACCACCCTGATATGAGTCGGAAAGAAAAAAGGCTTTAAGGGTTCTGAACCCCCTAC | |||||||||