| mature miRNA: TGGAGAAGCAGGGCACGTGCA species: Capsicum annuum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|224647506|gb|GD067282.1|GD067282 KS15041H06 KS15 Capsicum annuum cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): AAGCTTTCATATATGTCATAATATCCACAGAATGCACAACTTAAAAACATCACATAATAAAAAGTTGCTGAGGAACACATCAAATCAGCCCCATATTAAGAAAAAGACTTCAAGTTTGACATACGTAGCTCGAGTGACATCGGTGAACACATGAAGCATTTAATCCTCCAATTCAGCGGAAAACATCTTTCGATAGATGAAAAAACACCGAACATAAGTAGTAGTAGTACCAATCAAGCATCAATGCACTTGAAGCCCCTGCAAACACACAACCAAACTATGAACAATATAGTGCAGACCATTAAATCCAACGACAATACAACCCAAACTTGCTTCTTCCACACTTTCTTGGCTTTTTGGTGATGGTGGTGGTGGTGAAGGTGCCCTCCTTCTCCATGAATCAATCCATTCTTTTGCATAACAACCGAAAAGTCTCTATCCGAAACATCCACTTTCTTCTCACCAATCTCATCATTTCTCTTCTTAAACTGCCCAAAAATCCTCTTCTTTTTCAGCTTCAAACTATTAGCAGCATCAGCAAGCAACGGCATTGACCCGATTTTCTTCCCTTTCATCGAATCCAAACTCGCGCTACGCCCATGATCCACCTCACTCCTAGACGAATTCGACGACCCTTCTTCATCCACATCATTACTCGATTCCAATAGTTGATGAAAAACGGGATTCAGCTCACCCTGAAAACAATGCGAATGCAGCTTATCCAATCTCTTCTT | |||||||||
gi|224677120|gb|GD066754.1|GD066754 KS15036D01 KS15 Capsicum annuum cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): AACCGTAAACGATCTCTTTTCATTAAAACACACACAAATTTAATACAAGATACATAAAGGAGTGATGTGTCACAACTTATTTAATGTGTCAAATGGCCACTATAAGCCAAGAACACCATATTGTAAGTTACCCTTTTAAGAAAGGCAACACTTTATTTAATTTTGTTTGACACAAAATCCATTATCAGACTTAGTTACGCCCTGAAAATCTCTTCTTCAAGCAATTGTGCTTCGTTAGTTTTAGCATCCTGAACCAAAATAGTTCCAGCATCATTAGGAATATTGTCAAATACACATATCTTAGTGCATAGGCAGTTCCTTTGGATTTTGCTACAATGACCATCTTGAAATTTGTCCTTCTCGATACAAACTTTTCTACATGAAGAGTCGGTCCAGCATAATCCTGTGAAATATTTGCTTTTTGTTTTGCAAATGTTCTGACCTTGAACCCCATAGGCAACAAAGAGTGTCATTGCCAAGAAAAGAAATGCCATGAAGTAAATGGAACGAGCCATAGTCACTTTGAATGACTAAAAAAGATTGCAAATTTTTTTTTTTTAATAATAAGAAAGCCTCGTGCCGAATTCGGCACGAGGCCTGCTTCTCCGATTTTC | |||||||||
gi|224619365|gb|GD070199.1|GD070199 KS16008F01 KS16 Capsicum annuum cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGGTTCAACCCCCCACCCCACAATCTTAACACCCCCATCCCATCTTTTTTCCAGCTATAAATACTTGAGCTACTTCAAGCTTCTTAATTATCACCTCAAGTTCAAAATGAACAATTCCCTCCACAAGAAAATACCTTATTCTTTTTTTGGTTGTTTAAGTTATAGAGTTAGCTTTAGTTATGAAAATGTTGGTAATAATGGGTGGGTAGCTCTAGTTGGAGAAGCAGGGCACGTGCAAGTTCTTGAATTTGAAGATATGTGTATTTTTCATGCATGAATCTTGCACGTGTTCTGCTTCCCCAACCTGAGTTTCCTACCTCCTCTTCTCTCAAGGTTCTTAACAATTCAGACGAGCTAACTATTATTATAGTCAATCCCAACTTATTTTAACTACTTGAGACGTAATTATTGTTATCGTATCCCAAGCAAAAAATTAACCGATAATGGCATGCATGACTATGCCCTTAATTAAACAGAATAATGCAAATTATTTTACTATTTCTCGGTAGCTTAATTTTTGGTTAGATTATTAGTATAATATCAACAACTCTGTTTTGCAGGCTTTCTATAGAGAATTGACAGTGGGAGTTTCTGTTACTAAACATAATGTGTAGAATGAAAGGAAACCTATAGACCTATGGGTCCTTTTTGTCATGCTGTTTTGAGGTGGCAATGAAGTCAAATGGACCAAACATGGAGCTAGTGGTCCTACGCAGCATGGT | |||||||||