| mature miRNA: TGTCCAACTCCATGTTGGGC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52499693|gb|CV246718.1|CV246718 WS01111.B21_L04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01111_L04 3', mRNA sequence TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): AGCTATGAAGAACCCGAGAAGTGCTTTGATCAAGACCTCTATTATGGCTTCATCTGATATTTTTTATGCCTTTGGTGACCAATTACTTGACTCTACTAGCGATGCATTTGATAGTTTGCTATTGCAGCTGCTGCTTAAAGCTTCTCAAGACAAAAAGTTTGTGTGTGAAGAAGCTGATAGGGCTTTGAATGCATTGGTGAAATCCATGACTCCTCTGCCTTTGCTTAATAAGCTTAAGCTATATGTTAGCCATGTCAACCTTAGAATCAGGGCCAAAGCTGCTATATCCATCTCCAACTTTGTGTCTAAGATGGAGTTGGAAGGAATGAATGAGTTTGGTTTGGTTTCTTTGGTTCAAGTGGCTGCAGATCTGTTGAATGATAGGCTGCCAGAGGCAAGAGAGGCGGCAAGGAGAACTGTGATTTCTATATATGAAGCATATACAGGAAATGAAGAGCAGAAGCAGGAGGAATGGCAAAACTTTTGCCAATCCAGTTTGCCACCTATTCATGCCCAGTCTATTGTCAAAATTACATCTAGTTCTCGTTAGATTTTATGTTTGTCAAAGAACCATCTCAACCCAATAGCTTAAGCTGTTAGGTAAGGTTCAAGGATATGATTTATATTAGGTTCAAGGATATGATTTATATTATTCTCTAACAATGTTAAACTAAAAAAAAAAAAAAAA | |||||||||
gi|60694533|gb|DN485149.1|DN485149 M113A06.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone M113A06 3', mR TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): TTCACCCATCAAGGTTCTGTGAGAAGGAGTTGCTCAAGGTGGTTGATCGTGAATATGTCTTTGCCTATGTGGATGACCCGTGCAGTGCTACCTATCCATTGATGCAGAAACTAAGGCAAGTTTTTGTTGACCATGCGTTGGAAAATGGAGAGAACGAGAAGAATTTTAGCACTTCAGTCTTCCAAAAGATTGAAGCTTTCGAGGAAGAACTGAAGGCTCTTTTGCCAAAAGAAGTTGAGAGCGCTACCAGCAGCATATGATAGTGGGAATTCAGCAATTGACAACAAGATCAAGGAATGTAGGTCTTATCCACTGCACAAGTTTGTGAGGGAGGAGTTGGGAACTGTATTGCCCACTGGCGAAAAGGTCCAATCGCCCGGCGAGGAGTTTGACAAGGTGTTTACACCTATGTGCCAGGGGAAGATCATTGACCCAATGCTGGAGTGCCTTGGGGAATGGATATGGTTCCCCTCTTCCTATCTGTTAAGTGTTCTTCCTTTTACCAATAAATATTGTTGTATTTTTTTTACATTTGTTTGGACGGCTTTTCTGTCCTTACAGTTTTTTGGCATATGTAATATACACCACCACTAAAGATAAA | |||||||||
gi|60701035|gb|DN490937.1|DN490937 UM40TC10.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM40TC10 3', TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): AGATGCTCTAATATCATCAGGGAAAAACAGTGATCCAATGCCATTCATATTTGACACGGTCTGGGACTTGATAAAACTGGCTGATTATCTAACTCAGAGGGAGGATATAGATCCTACAAGGATAGGAATTACTGGAGAATCGTTGGGAGGAATGCATGCTTGGTTTGGTGCTGCTGTTGACACCCGATATTCAGTGGTGGTCCCAATAATTGGTGTGCAGGGGTTTTGTTGGGCCATAGACCATGATAAGTGGCAAGCTCGAGTTGACAGTATAAAGCCTGTATTTGAAGAAGCGCGGAAAGATCTAGGCAAGAGTGCAATTGATAAAGAAGTGGTGGAGAAGGTCTGGAATAGGATTGCACCTGGTCTGGCTTCTTGCTTTGATTCGCCATATACAGTTCCAGCCGTTGCACCAAGACCTATGCTGATTGTTAATGGTGCAGAAGATCCTCGATGCTCACTCGCAGGTTTGGAAGTTCCCAAATCAAGAGCAATTAAGGCTTATGGAGAAGCACACTCTCTAGATAAATTTAAGCTGGTTGCTGAACCTGGAATTGGACATCGAATGACGCCATTCATGGTAAAAGAAGCAAGTGATTGGTTTGACAAGTACCTTAAGCAACAAGCTGCTTAGTTCATCTTGGCGGCAGCATTGTATCAGTATGTTTTCTTCTGTATTGTTATTTGCACTAAAATCAAGCAGCAGCTCTAAAAACAATTTAACAAGTTATATGAGGATACACTCAGTT | |||||||||
gi|73880705|gb|DT483443.1|DT483443 WS02522.B21_J18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_J18 3', mRNA sequence TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): CGAACCGATGGGTCACACCCAACCTGCGAGTCACCAACTCACATCTGAATCAGATCAGAAGTCAGAACACTCCAGGGGTTCAAAGTTGGCCGATGAAAATGAAAACGAGAAACCACTCCAGGTTGGCCACATGCGTATGAGGGACAGTCATGGAAAAGCACAAAACAGCTCAACCAGGAGTTGTACAAAGGTTCACAAGCAGGGGATTGCACTTGGTAGATCCGTTGATCTTACGAGGTTCAATAACTATGATGAGTTGATTGCTGAATTGGACCGGTTGTTTGAATTTAATGGTGAATTACTGGCTCCCCAAAAGAATTGGTTGATTGTGTATACTGATGACGAGGATGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAATTCGTCGGCATGGTTAGGAAGATTGTTATTTACACCAGAGAGGAGGTACAGAGGATTAAACCAGGCACTTTAAATTCAAGAGTCAATGAAAATCCATCGGGCGTGGAGGGTGAGGATGCTAAAGAAGCCAAACATCTGCCACTTCCTTCAGCATCTAGTCCTTTGAGTTGTTAGATTTGGCTTCCTCGGGTTCAAGGTTTTGGGTTCAGGCAGCTAGAGAGTGCAATGGCTATTTCAGTTGGTAAGAATGAGATGGGTGCCAGTCTACTACTATTCAAGATGTCAAGTTTGCTGCTATAAAAAATAGATGCAAGAATGATATAATCCAATTTTGGACCTTTTATGGAGCTAGTATTGTATGGTGTCCAGTTATACATAATTTATATATAGCCGCAATGTCTAGCGATACCCTTGCTTTTTTTCTGAACCAAACCATCCTGAACCTTGTACATAACTACCTTACCTTTACCCTACCTCTTAATGTAAGTAAGTTTATACACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73874257|gb|DT476995.1|DT476995 WS01231.B21_J06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01231_J06 3', mRNA sequence TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): TTGCCATCGAATCTCACTGCTAGCAGGAATCCAAGTTGGGATTATGCTTTCAAGGGAGCTGAAATAGCAATGGCCTCCTACTGTTCTGAGCTTCAGTATCTCGCCAATCCAGTCACCACCCATGTGCAAAGTGCCGAGCAGCACAATCAAGATGTTAACTCGTTGGGGCTTATCTCTTCAAGAAAGACAGCAGAAGCTGTTGATATCTTGAAGCTCATGTCCACAACCTTCTTAGTGGCTCTTTGCCAAGCTATCGACTTGAGGCACTTGGAAGAGAACTTGAAGAGCGCAGTCAAGAACACAGTTAGTCAAGTATCCAAGAGGGTTTTAACTACAGGTGCCAACGGAGAACTTCACCCATCAAGGTTCTGTGAGAAGGAGTTGCTCAAGGTGGTTGATCGTGAATATGTCTTTGCCTATGTGGATGACCCCTGCAGTGCTACCTATCCATTGATGCAGAAACTAAGGCAAGTTTTTGTTGACCATGCGTTGGAAAATGGAGAGAACGAGAAGAATTTTAGCACTTCAGTCTTCCAAAAGATTGAAGCTTTCGAGGAAGAACTGAAGGCTCTTTTGCCAAAAGAAGTTGAGAGCGCAAGAGCAGCATATGATAGTGGGAATTCAGCAATTGACAACAAGATCAAGGAATGTAGGTCTTATCCACTGTACAAGTTTGTGAGGGAGGAGTTGGGAACTGTATTGCTCACTGGCGAAAAGGTCCAATCGCCCGGCGAGGAGTTCGACAAGGTGTTTACAGCTATGTGCCAGGGGAAGATCATTGACCCAATGCTGGAGTGCCTTGGGGAATGGAATGGTTCCCCTCTTCCTATCTGTTAAGTGTTTTCTTTTACCAATAAATTTGTTGTATTTTTTTTACATTTGTTTCGACGGCTTTTCTGTCCTTACAGTTTCTTGGCTATGTAATATACATATATAATGTCATGGAAAGGAAAAATCAGTTCCGAAAAAAAAAAAAAAAA | |||||||||
gi|52498323|gb|CV245348.1|CV245348 WS0257.B21_C19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_C19 3', mRNA sequence TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): GGGAAAGGCTCAAAGAGTGGAGCCTCTGGGACATGTCGTGGCTGCCAAGGTACTGGAATGAAAGTTTCAATCCGACAGATTGGATTGGGCATGGTCCAACAAATGCAACATGTGTGTCCTGAATGCAGAGGCTCAGGTGAGCTAATTAGTGAGAAGGATAAATGCCCTCATTGCAGAGGGAATAAGGTAACGCAGGAAAAGAGGGTGCTGGAAGTGCATGTTGAAAGGGGAATGCGACATGGCCAGAAGATAGTTTTTGAAGGTCAAGCTGATGAAGCTCCTGACACAATTACAGGGGATATTGTTTTTGTATTGCAACTGAAAGAGCACTCCAAGTTTGAACGGAAAATGGATGATCTCTTTGTGGAACACTCTGTCAGTTTAACAGAGGCTCTTTGCGGGTATCAGTTTGCCCTTACCCATCTCGATGGTCGGCAGCTTCTTATTAAATCAAATCCTGGGGAGATTGTAAAACCTGGTCAATACAAAGCAATTAATGATGAAGGAATGCCACATCATCATAGGCCCTTCATGAAGGGCAAGCTCTATATCCATTTTAATGTGGAGTTCCCCGAGTCGGGGACTCTATCCCCTGAGCAGTGCCGTACTTTAGAGACTATATTACCCCCAAGGCAAAGCAAAAACTTGTCAGAGATGGAGTTGGATAATTGCGAAGAGACAATTATGCATGATGTCAATATTGAGGAGGAGAAAAGGCGTAAACAGCAGCAGCGCCAGCAGCAGGAGGCATATGATGAGGATGATGATGATGAAGAATCACCTATGCCCCGAGTGCAGTGTGCCCAGCAGTAAGCCAGATATTACAGTTCTATTATAATTTACATCTTTTCCAGCTGGATTCTATACTCTTGCTTTATGTCGATGATCTATGGTTTGTGTTATTTATCCCCGATTAGTCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73885328|gb|DT488066.1|DT488066 WS02535.B21_G17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_G17 3', mRNA sequence TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): TGCCGAATTCGGCACGAGGGCAGTGCAACCTATCCATTAATGCAAAAGCTAAGGCAAGTACTAGTCGAGCATGCCTTGGTGAATGGCGAAAGGGAAAGGAATTCAACCACTTCGATTTTCCAAAAGATCGGATCTTTTGAGGAAGAACTGAAGACCCTTTTGCCTAAAGAAGTGGAGAGTGCTAGACTTGAAGTTGAGAATGGAAATCCAGCTATTCCAAACAGGATCAAGGAATGCAGGTCATACCCCCTGTACAAGTTTGTGAGGGAAGAATTGGGAACCAGTTTGCTAACAGGTGAGAAGGTCAAATCGCCCGGCGAGGAGTTCGACAAGGTTTTCACAGCTATCTGTGCAGGGAAGTTGATTGATCCCTTGCTGGAATGCTTGAAGGAATGGGATGGTGCTCCTCTTCCTATTTGCTAAGCTATGGATGTCCTGTAATCATCTTTTTTTTTTCTTTTTTCTTACTAAGCTTACTTGCCATGTCAATTTGTTCGTAACAAGCAAAGTGTATGCCTCTGTTGTCTATTTACTTTCAAATCATTAAAGAATCTTTCTTTGTACAACAATAAATATACCATCCTAAATGAAAAAGATAAGTATATTTAAAGTGTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52498709|gb|CV245734.1|CV245734 WS0259.B21_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0259_D19 3', mRNA sequence TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): GCCAGCCTCTCTCTGAGTGTATTCGTTCAGCAACTTAACTAAGGCATTATATAGCATCTTAGAGCTTGCTGGTTGTTAATGAGCTTTTTTGTGTACTCGCCGCTGCATAATGTCCGCAGACCATGGGAACAACATCCCGAACAACCTTCACAGTACCCACCCACCATGCTATTGACTGCTGATCATGATGATCGAGTTGTGCCATTACACTCTCTGAAGCTGCTGGCTACCATGCAATATATTTTGTGCACGAGTTTGGAGAATAGTCCTCAGACAAATCCAATCATAGGTCGCATTGAGTGTAAGGCTGGACATGGAGCTGGACGCCCAACTAAAAAAAAGATCGATGAAGCCGCTGATACGTATAGCTTCATGGCAAGGATGTTGGATGCTTCTTGGAACGAGTAAGATCGGATTTGGATGTAAAAGGAGCACCTACATTTGATAGAAAGATCTAAATGATCAATAGATATTGTCGTCGCAGCTCTCTCTTTTTTTCAAATTCTGAAATGAACATTTATTACCTGAAAAGGACAACACCCATTTCTCCAAATTAATCATGCTTTTATGAGGGTTTTGCAACAGTGACATTGTAAGTTCTGATTACCGAGCCCGAGTCCTAAAATAACCCCATTTTGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|60711132|gb|DN500942.1|DN500942 UM40TC10.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM40TC10 5', TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): AAAGCAAGAGTGGTTACGACCTTGCTCGAGCATATGCTTCGCGGGGATATGTTGCAATTGCGATTGACTCTCGCTACCATGGGGAACGAGCCAGCAATTTGACTACCTATAGAGATGCTCTAATATCATCATGGAAAAACAGTGATACAATGCCATTCATATTTGACACGGTCTGGGACTTGATAAAACTGGCTGATTATCTTACTCAGAGGGAGGATATAGATCCTACAAGGATAGGAATTACTGGAGAATCGTTGGGAGGAATGCATGCTTGGTTTGGTGCTGCTGTTGACACCCGATATTCAGTGGTGGTCCCAATAATTGGTGTGCAGGGGTTTTGTTGGGCCATAGACCATGATAAGTGGCAAGCTCGAGTTGACAGTATAAAGCCTGTATTTGAAGAAGCGCGGAAAGATCTAGGCAAGAGTGCAATTGATAAAGAAGTGGTGGAGAAGGTCTGGAATAGGATTGCACCTGGTCTGGCTTCTTGCTTTGATTCGCCATATACAGTTCCAGCCGTTGCACCAAGACCTATGCTGATTGTTAATGGTGCAGAAGATCCTCGATGCTCACTCGCAGGTTTGGAAGTTCCCAAATCAAGAGCAATTAAGGCTTATGGAGAAGCACACTCTCTAGATAAATTAAGCTGGTTGCTGAACCTGGAATTGGACATCGAATGACCCCATTCATGGTAAAAGAAGCAAGTGATTGGTTTGACAAGTACCTTAAGCACAAGCTGCTTAGTTCATCTTGGCGGCAGCATTGTATCAAAATGTTTTCCTTCTGTATTGGTATTTGCACTA | |||||||||
gi|18019214|gb|BI138266.1|BI138266 F102P32Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TGTCCAACTCCATGTTGGGC EST sequence (targeted fragment marked with yellow): GGGGAATTCAGCAATTGACAACAAGATCAAGGAATGTAGGTCTTATCCACTGTACAAGTTTGTGAGGGAGGAGTTGGGAACTGTATTGCTCACTGGCGAAAAGGTCCAATCGCCCGGCGAGGAGTTCGACAAGGTGTTTACAGCTATGTGCCAGGGAAGATCATTGACCCAATGCTGGAGTGCCTTGGGGAATGGAATGGTTCCCCTCTTCCTATCTGTTAAGTGTTACTTTTACCAATAA | |||||||||