| mature miRNA: TTTAAATGCCTTAAATTCCCGA species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218453486|gb|GH290651.1|GH290651 WS0474.C21_N10 SS-BD-32 Picea sitchensis cDNA clone WS0474_N10 5', mRNA sequence TTTAAATGCCTTAAATTCCCGA EST sequence (targeted fragment marked with yellow): GGGGAACGTGCATTGCAACAGTTCTAAGTTCTCGATCTGAGCTTTGGGTAGCAACCATTCTGGATACAATTGTTTGAGCTCTGATAATAGAGTCGCAAAGATGTTGGCAGCAGCTCAGAAGGATGAAAAGAAGGACCAGGCTCTGAAAAATCACGTGGGTCATCCCCAAACAGGCAGAGATTGCCCATTTACACTTCTCAACTCTCCTATCTCTCATACCCAGTATCCATATGTAACTGGTACATCAGTCTTGGGTATTAAGTATAAAGATGGAGTTTTGCTAGCATCAGACATGGGAGGATCATATGGATCTACCTTACGTTACAAGAGTGTCCAGAGATTGAAGCCTATTGGCAAACATACTCTCTTGGGTGCTGGTGGAGAAATCAGTGATTTCCAGGAGATAGTACGTTATCTTGATGAACTCATACTTTATGACAACATGTGGGATGATGGCAACTCCTTGGGTCCTAAAGAAGTGCACAACTATCTCAATCGGTTGATGTACAACAGGCGAAATAAATTTAATCCTCTTTGGAACACACTTGTTTTGGGTGGAGTCAAGAATGGTCAGAAATATCTGGGCACGGTCAATATGATAGGGGTGCATTATGAGGAGAACCATGTTGCTACTGGATTTGGTAATCATCTTGCTAGGCCAATTTTCCGTGATGAATGGCATGAGGATATGACCTTTGAAGAAGGTGTCAAGCTTCTTGAAAAGTGCATGCTTGTGCTTTTATATCGTGATCGGTCAGCTGTTAACAAACTACAGATAGCAAAGATCACAGAAGAAGGAGCCACAATTTCTGAACCATATGCTATAAAAACACATTGGGAACTTGAGGCATTCAAGAACCCAGCGACAGGAGCTGTAGGTTCATGGTAACGAGAAACAGTGGTCATGCAGTTGT | |||||||||
gi|218446790|gb|GH283557.1|GH283557 WS0452.C21_N24 SS-BD-N-30 Picea sitchensis cDNA clone WS0452_N24 5', mRNA sequence TTTAAATGCCTTAAATTCCCGA EST sequence (targeted fragment marked with yellow): GGGCACGTTATCTTGATGAACTCATACTTTATGACAACATGTGGGATGATGGCAACTCCTTGGGTCCTAAAGAAGTGCACAACTATCTCAATCGGTTGATGTACAACAGGCGAAATAAATTTAATCCTCTTTGGAACACACTTGTTTTGGGTGGAGTCAAGAATGGTCAGAAATATCTGGGCACGGTCAATATGATAGGGGTGCATTATGAGGAGAACCATGTTGCTACTGGATTTGGTAATCATCTTGCTAGGCCAATTTTCCGTGATGAATGGCATGAGGATATGACCTTTGAAGAAGGTGTCAAGCTTCTTGAAAAGTGCATGCTTGTGCTTTTATATCGTGATCGGTCAGCTGTTAACAAACTACAGATAGCAAAGATCACAGAAGAAGGAGCCACAATTTCTGAACCATATGCTATAAAACACATTGGGAACTTGAGGCATTCAAGAACCCAGCGACAGGAGCTGTAGGTTCATGGTAACGAGAAACAGTGGTCATGCAGTTGTCCCAATTGCTGAGACTAATTGAAGATATCAATATACTTCTAATATGACTGGCCAGGCTGAAAATGGATTTCTTACTCATTTTTTTAGTATCAAACAGGCCCCTTTATCATAATGTTCTTTGGAAGTTAGCTTGGAGTCGGATGTTGAAGCAAATATGAGTCAGCTGCATTCCAATTTATCTATGTTGAATGACATGATAAAAATGATAGAGATTTCCTATGGTCAACTTTGTAATGCTTTCAATAATTTTATTTTCTCGAGTTAAACATGAAGTTTTAAATGCTGATTTTGATACCATTTTCAACTACATAAACAAGGGTTCTTGTTCACTCCAAAAAAAAAAAAAAAAA | |||||||||
gi|149977687|gb|ES877712.1|ES877712 WS02935.CR_I05 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02935_I05 3', mRNA sequence TTTAAATGCCTTAAATTCCCGA EST sequence (targeted fragment marked with yellow): AAGAGCTCTTTTTTTTTTTTTTTTGCGAATCATGTGACCTGGTAGAAAAATTTAAATCAATTAGAATTTACGCCCAGATCCGTGCCGTGACTGCCGTCCCGTTCCATGTTCATTGAAGGCAGCTTTGGCCGGTAATATCGAGATCTCGGTTTCCCGTCGACGGCGGAGGCAGGCGGCTGAAGAAATCCTCGCCAGAGAAACGTCTGCCGTCTGAGATTGCTGGCCGTCGGGCGGTCCGTCTGCCGTTGTGGGCCGGCGTTATCTGTTCCGTAGAGCCCTCCCTCCGCCCGAAGAGCCCTCCGTCACAGCGTTCGGATCAGAGATCGGTCGAATGAGCAGCTCCTTTCTAAGGCCGGGGCCCTGGACCTTCCCCTGTCATCCGTCGATGCTCTCCTTCTCTTTGCATGTATTACCGTGGATGGCATATAATCGCATGTTTGCGCTCCTGTTTGGGATAAATCCAGAACTTCAAATGCTTTAAATCCCGAAATATATTCGGTCATCGCCTGAATTTATCGGGAATTTAAGGCATTTAAAGTTCTTGGATTTAAGCCAGTCGTTTCTGCTCGGCTCCTGAAGTGGTCTGATCTGTTGGCGTATATACGCTGCCTCTGCTGTTCAGGCTCACGCCATTTTTACGAGAATCAAACCCTGGTACAAGGGCGTGTAAATAGAAAAAACCCTATGGGCCATAGTATAG | |||||||||
gi|49049006|gb|CO226691.1|CO226691 WS01030.B21_G08 SS-R-N-A-11 Picea sitchensis cDNA clone WS01030_G08 3', mRNA sequence TTTAAATGCCTTAAATTCCCGA EST sequence (targeted fragment marked with yellow): AAATAAATTTAATCCTCCTGTGGAACACACTTGTTTGGGGTGGAGTCAAGAATGGTCAGAAATATCTGGGCACGGTCAATATGATAGGGGTGCATTATGAGGAGAACCATGTTGCTACTGGATTTGGTAATCATCTTGCTAGGCCAATTTTCCGTGATGAATGGCATGAGGATATGACCTTTGAAGAAGGTGTCAAGCTTCTTGAAAAGTGCATGCTTGTGCTTTTATATCGTGATCGGTCAGCTGTTAACAAACTACAGATAGCAAAGATCACAGAAGAAGGAGCCACAATTTCTGAACCATATGCTATAAAAACACATTGGGAACTTGAGGCATTCAAGAACCCAGCGACAGGAGCTGTAGGTTCGTGGTAACGAGAAACAGTGGTCATGCAGTTGTCTCAATTGCTGAGACTAATTGAAGATATCAATATACTTCTAATATGAATGGCCGGGCTGAAAATGGATTTCTTACTCATTTTTTTAGTATCAAACAGGTCCCTTTATCATAATGTTCTTTGGAAGTTAGCTTGGAGTCGGATGTTGAAGCAAATATGAGTCAGCTGCATTCCAATTTATCTATCTTGAATGACATCATAAAAATGATAGAGATTTCCTATGGTCAACTTTGTAATGCTTTCAATAATTTTATTTTCTTGAGTTAAACATGAAGTTTTAAATGCTGATTTTGATACCATTTTCAACTACATAAACAAGGGTTCTTGTTCACTCTGCAGGAGTCTATTTACTAGTAGGCGCATATATTGAACATTTGCTTAATTAGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|70339003|gb|DR536434.1|DR536434 WS02749.C21_C17 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02749_C17 5, mRNA sequence TTTAAATGCCTTAAATTCCCGA EST sequence (targeted fragment marked with yellow): TGGCATTGCAACAGTTCTAAGTTCTCGATCTGAGCTTTGGGTAGCAACCATTCTGGATACAATTGTTTGAGCTCTGATAATAGAGTCGCAAAGATGTTGGCAGCAGCTCAGAAGGATGAAAAGAAGGACCAGGCTCTGAAAAATCACGTGGGTCATCCCCAAACAGGCAGAGATTGCCCATTTACACTTCTCAACTCTCCTATCTCTCATACCCAGTATCCATATGTAACTGGTACATCAGTCTTGGGTATTAAGTATAAAGATGGAGTTTTGCTAGCATCAGACATGGGAGGATCATATGGATCTACCTTACGTTACAAGAGTGTCCAGAGATTGAAGCCTATTGGCAAACATACTCTCTTGGGTGCTGGTGGAGAAATCAGTGATTTCCAGGAGATAGTACGTTATCTTGATGAACTCATACTTTATGACAACATGTGGGATGATGGCAACTCCTTGGGTCCTAAAGAAGTGCACAACTATCTCAATCGGTTGATGTACAACAGGCGAAATAAATTTAATCCTCTGTGGAACACACTTGTTTTGGGTGGAGTCAAGAATGGTCAGAAATATCTGGGCACGGTCAATATGATAGGGGTGCATTATGAGGAGAACCATGTTGCTACTGGATTTGGTAATCATCTTGCTAGGCCAATTTTCCGTGATGAATGGCATGAGGATATGACCTTTGAAGAAGGTGTCAAGCTTCTTGAAAAGTGCATGCTTGTGCTTTTATATCGTGATCGGTCAGCTGTTAACAAACTACAGATAGCAAAGATCACAGAAGAAGGAGCCACAATTTCTGAACCATATGCTATAAAAACACATTGGGAACTTGAGGCATTCAAGAACCCAGCGACAGGAGCT | |||||||||