| mature miRNA: TTTCGGTTCAGTTCGGTTCGG species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218793897|gb|FC878136.1|FC878136 IC0AAA42CH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CH10, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): CCCTTAAATCAGTTGCACGCAAACCCTACCGTCGTTCATGCCGCTGTTCATGCCCAGCTGCTATTTGTGTTGCTATTCGTGTTGATGCTCTTGCCTTGAAGCCGCTACTCGTGCCGTTGTTTGTGGTCTTGCTCATGATTTGAAGCCACCGTTAATTTGATTTCTGGTGCTGCTTGCTGGTGGTAAGGGTAGGTAAAATACTCGTCTCGACCCGACCTGATCCGAAAAAAAATCAGGTTCAGATCGGATCGGATTGTGAATAAAACTCGAATGGGTGCATTTGTGTCAACCCTATCGGATCATGATCAGATTGGGTTGACCCGATCGGGTTGACACAAAATAAAAAAAATTAAACCCCAAATACACATCACACATACTGGAACACGATCTACACACACCACATACATTGGAACACGATCTACACACAACACACCACACACTGAAACACAGACACAAAAATAGTCAAGCATACATAAAGTTCACGCCCACACCCACCCAGGCACCCACAGCCCACTGTCGACCAGCAACGTAATCGCCCACACCCACCCACAGGCCACAACCTCCCTCTCTCGCATCCCACTACCGACGGCAACAAGCGGCAGTTACACAACCCACACCCACAACCAAACAAACAAAATATAGTCACAATCACAAACAATCAAACACACACATGAAGTTCACGGAGCAAGCTAGATTTGGCCACCAGACGTAGCAACCGTTGAGAGCCAACGCCAACCGAAGCTACTCCGCGAGGATGGTAACCCGATCTACCGATCTACTGCTACCAAGTACCAGATCTGCTGCCCCACCTCCACGCCTCCAATCCTCCGCCATCACCCGATCCGATTCAAGCTCCATTTGGC | |||||||||
gi|218791056|gb|FC894898.1|FC894898 IC0AAA63AF03FM1 IVIA1 Citrus clementina cDNA clone IC0AAA63AF03, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTGAAGATGTACATTATTGACAAGCATAAAACAATGTCAGCTTGAAAAGAAGCAAATAAAAGCACATATTTAGACAGGAGAAACTCACAAACTACCTCAGTTTTTGTGCTGCATCCTACCACTTTCTGCACCAGCATAGGGATCAATAGTAACATTTATTACAGCTGGCTTTCGTGCAGCAAACGATTCAAAAAGGGCCGACTTGAGTTCATCTGGTGTCCCAACTAAATATCCTTTTCCCCTAAAAGCTTCCATGAGCTTATGATAAGCTGCACCAGGTACAAAAGAAGTAGGTGCAGGATCATCTTTGAAAGGCCCTGCAATTTCTTCAGGGTTTCTGCGATCTCCACCATACACACCACCATTATTAAAAACTATCACGACAACAGGCAACTGATATCGAACCAATGTCTCAACCTCAACCGCACTGAACCCAAATCCAGAGTCTCCTTCAACAGCGACCACAAGCCGTTCAGGGCAAGCTATTGCAGCAGCAATGCAATACCCTAAACCAACCCCCATGGTCCCCCAAGTCCCTGCATCCAGCCTACAGCGAGGCTCAGTTTGAACCAATACTGCCCTACCCACATCCATAGTATTTGCCCCTTCAGATACCAATATAGGAGCGGGGCTCCCGACTCCTAAGATCGCATCTCTTATAATCCTCATTGGCGTCATGAAATTAAACGGCACAACATC | |||||||||
gi|218792225|gb|FC890506.1|FC890506 IC0AAA41CA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA41CA03, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): AAAACCTTTGACGCTTCGGTGCCGCTTCCTTCTGGCTTTGCTGCCGCTGCCGATTCCTTCTAGCTTTGCTGCCGCTGCCGATTCCTTCTAGCTTTGCTGCCGCTTCCCAATAACTGTCTTAGCTTCCTTCCGGCTGCACGTTCTAGCAGCCATCGCTGATTCCTTCAAGTCTACTGCTGTTGCCGCTTCCTTCTGGCTTTGCTGCCGCTGCCGATTCCTTCTAGCTTTGCTGCCGCTGCCGATTCCTTCTAGCTTTGCTGCCGCTTCCCAATAACTGTCTTAGCTTCCTTCCGGCTGCACGTTCTAGCAGCCATCGCTGATTCCTTCAAGTCTACTGCTGTTGCCGCTTCCTTCTGGCTCTGTTATGGTCACTGCCGCTGCAGCTTCCTTCAAGATTATTGACTCTATTGTGGTCACGGGTCACTGAGCTCTCTAAGCCCCTCATTGAGGAGGAGATCCCCGCGTGAATTGTTGAACCGTTACTCCGATCCGCTATCGAACCGACCGAACCGAACGAACCATTTATTCCGGTTCGGTTATTATTTTATTTCAGAGTTATTCGGTTTTCGAAATTTTCGAACCAAACTGAACCGAAAATTTTCAGTTTTCTCCGAAACCGAACCGACCGTCGCCCACCCCTTTATTTGCCTGAATCAAAACATTTGCTTTTAATTTTGGCTTTCAAATGACCTAAATACTCTTGCTGATCTGTTCAATTTGACTAACTTGACCTCCGTTGGACCACACCACAGTGTCTCTACAAGAACGCAGTTGATTTTATAATTTGC | |||||||||
gi|218825743|gb|FC868565.1|FC868565 C31002A01EF AbioticL1 Citrus clementina cDNA clone C31002A01, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): GGCTGTGTGCTCGGTTTACGTATTGGAGATTTCAGAGAGAGCGAGAGGGAGAGAGAGAGAGATTTGTGCGTGTCTCTGTCTGATCAAAATGAACGGTGTTGATGCGTATGGTGTGATGGAGGCGCAGTACATACGGAGGCATCATAGGCACGAGCCCAGAGAGAATCAGTGTACCTCTGCCCTGGTCAAGCACATCAGAGCTCCTGTTCATCTCGTATGGTCTTTGGTAAGGCGATTTGATCAGCCACAGAAGTACAAGCCATTCGTTAGCAGGTGTGTGGTTAATGGGGACCTTGGAATTGGTAGTGTTAGAGAAGTGAATGTCAAATCTGGGCTTCCTGCGACCACCAGCACTGAAAGGCTGGAACTTCTTGACGATGAAGAGCACATCCTCGGAATCAAAATTGTTGGCGGTGATCACAGGCTTAGGAACTACTCTTCGATCATGACTGTCCATCCGGAGATCATCGACGGGAGACCTGGGACGCTGGTAATTGAGTCATTTGTAGTAGATGTTCCAGAAGGAAACACAAAGGATGAGACATGCTACTTTGTTCAGGCCTTGATCAGGTGCAATCTCAAATCTCTGGCTGATGTCTCTGAGAGGATGGCGGTGCAGGACCGAACTGAACCAAATCACCATTCTGATGGGAGAACTACGGTGTGCATGACATGATGGTTCTAGATTCCCAGATCTTTTTAGGGA | |||||||||
gi|63068285|gb|CX299431.1|CX299431 C06022D07SK RindPdig24 Citrus clementina cDNA clone C06022D07, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): GGCAATAAGCCGATAATGCTATTCAATTTCATTATTTACGTAAGAAATGAGAAGGTCTGGAGGAAAAGAAAAAATAAGCACCAGACTTTGACTCTTGGAGTGGGTTATTATTATTATTAGGGGTGGACATTTTACCTGATCCAACCCGACCCGACCCGATAAATTTCAGGTTTGGGTCGGATCGGGTCGGGATCGAAACCCGATCGGTTTGAAATTTACAAACCCGATCGGGTTGTGATCGGTTCGGGTCAAACCCAACCCGATCCGAATACCCGATCGGGTTCTTAAAAAAAAAAAATGTACTGACCCAAATTGACTTGATTTCAACCGACCCGAACTGACCCGAATTGACCCGAACTGACCCGTACTGACCCGATTTCAACCGATCCGAATTGACCCGAACTAACCCAAATTGACCCGAACTCAATCCTACCCATTTTAAATCCAACCCGATCCAACCCGAATATAACCCGAATTAATGATCCGACCCGAACCCGATTTTGCCCACCCCTAATTATTATTATTATTTTAAGGGATTGGGTGTTGTTAAATTTATTATTTTTGTTGAACTCTTAAAATATCTTCTGTAATGAGTAATCCTTTCTCTTTAGATTTTTGTTTGGAATATGAACACAACAATCCAAACCCTTCACTTTCATGGATTTTGAATTTTTCCCATTCCTGGCCAAT | |||||||||
gi|218800026|gb|FC897100.1|FC897100 IC0AAA66CD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA66CD05, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): CTCTCTTCCTGTTCCTGATAAAGAGGGTGATAGAGGGTATGCAGGCGGTGTTTTTTTAACCGAACTGAACCGAACGGACAGCCAAACCGACCGTTTCTTTAAAAAATATTGTTTAATTTAAAATATAAAATCAGAAATCAAATTCAATTCCTAATTTCCAATCCACTTCCAAACCCTAGATCCGCGGCAATCTATCTCAGACTTTCACACTCACGTCGCGGACTCACGGTCTCACTCTCACCAAACACGATTCAGGCGTCGTCACCACCATCTGCCACCGCTCGTCTCCTGCAGTCATCTTTGCCGGCCGCCGCTGAAGCATCAACCACCCATTACTAACTATTCAAGCCGTCACGACCGCTGCCGCTCGTCTCCTGCCGTCATCTTCGCCAGCCGCCGCTTGTTACTCATTCGACACTCACGGTTCAAGCATCCACCACTGTCAACCGCCGCTCGTCTACTGTCTCATCTTCGCCAGCCGCGGCTCGGCAGTCGTCACCTCATTCATATCGCCAGCTCTTGCAGCCTCTCTCCGTCGCTGCTGTCGCGGCCGGTGAAGTTTCACAATATGGCTTGCACAAGCTACTGTCTTTCTCCTTGTGTGAAGCTTTGCAGCAGCAGCAGCAAGTGCTTTCAGTTTCCGAAGCCATTTGCTTCATCAAATAATCTTAGATTCTCTGTGGGACCCAATTTCAGCATCAGTTTTAATCCCCAGGGTAGTAAAAGTTCATTGTTTAGCACTTTCAAGTGCCTTGCCCAGAAATCACAGCCGTCCGTTTCAGTTAATGCACCCACCAATGCCGGGCAGAGGGTGGTAGTGTTGGTCATTGGTGAANGGGGGGAAGGGAACATGCACTTTGCTATGCTTTGAAGAGATCTCACTCATGTGATGCTGTATTTTGTGCGCCTGGTAATGCGGGGATATCCAACTCAAGTGATGCTACTTGTATC | |||||||||
gi|218816002|gb|FC884107.1|FC884107 IC0AAA38DG04RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38DG04, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): TTGAAATCTTAAACCCGAATGGACCTGAACTGAAAACCCTAAAACCAAACTGAATAATTTTTAAAGAAATGGCAACTTCTGTTACAACTCCAAAGCTCACAACAACCTTCTATAAGAGACTACCAATTACAGTCCCACTCTCTTCTCACTTTCTTTCGCTACAAAATACTCTAACTCCATTCTCTCACAATTGCTGCTCGCTTCTTTATTTTCAATGCCAACGCCGCCACGTTGCGGCTCGAGCCAAGTCTGATAATGGAGCTGAGCTGCCGAGCCACTACGACTTTGACCTCTTCACTGTTGGTGCCGGCAGCGGTGGCGTCCGCGCCTCCCGTTTTGCCGCCAATTTTGGCGCTTCTGTGGCCATTTGTGAACTTCCATTTTCCACCATTTCTTCCGAAACCACGGGCGGCGTTGGCGGCACGTGTGTACTTCGTGGATGTGTGCCAAAGAAGCTTTTGGTGTACGCGTCAAAATTTTCTCATGAATTCGATGAGAGTAATGGTTTTGGATGGAAATATGGGACGGAACCGCAGCATGATTGGAGCACTTTGATTGCTAACAAAAATGCTGAGTTGCAGCGCCTTACCGGTATCTACAAGAACATTCTAATCAATGCTGGCATTACCTTAATTGAAGGTCGTGGAAAGATTGTGGACCCACACACTGTTGATGTGGATGGGAAACTGTATTCAGCTAGGCACATACTGATTTCGGTTGGGGGACGGCCCTTCATTCCTGACATTCCTGGCAGTGAATATGCAATAGATTCTGATGCTGCCCTTGATTTGCCCTCGAAGCCTGAGAAAATTGCAATTGTTGGTGGTGGATACATTGCCTTGGAATTTGCTGGCATCTTCAGTGGTCTAACAAGTGAGGTCCACGTATTTATACG | |||||||||
gi|218846855|gb|FC909417.1|FC909417 IC0AAA9DD09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA9DD09, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): AACGAAACCAAAACCCCACATCGCTGACGAGCTTCGCTGCGACTCTGCCGACCTTTGCTGCCTTCTTTGCTTCTCGCTTTCACTAATCGCTGCCGCGGCAGCCTTTCTGTTTCGGTTCACTGCCGACCTTTGCTTTTTTGCTTCTCGCCGTCTCCACTCTCCTGTCCACTGCCGCTGCCGTTGCTGCTTCCTTCCGTCGCCAGCCAGCCAACCAGATTTAAATTAGAAAGTGTGTGGATGTTGGAAGTTATTAAAGTTGCAGAAGTTGTGAGAAAGGGGAGCAAATAATGGTGTTTCTTATGGTTTTTTTTAATTTTATGTTGTAATAGTTTCTTATGGTTATGGATGTTAAGTGAACCGTTACCAAAAGACCAAAACCGAACTGAACCGAACTTTCGGTTTCAGTTCGGTTTTTATTTTCAAAAAATGTCTTTCGGTTTTTTAATTTCCCAATCCGAACTGAATCAAAAATTTCGGTTTGTCCCAAAACCGAACCGAACAGATGCCCACCCCTAGACTCTAAGGGATGAAGCTTGATGTTGATGTGTTACGTTATCTCTCAAAGGATGATTTCAGGGTTCTCACTGCCGTTGAAATGGGCATGAGAAATCATGAAATTGTACCTTCGGAACTCGTGCACCGAATTGCTTCTCTGAAGCATGGAGGCACCTACAAGGTTTTGAAGAATTTGCTTAGGTACAAGTTGTTGCACCATGACTCTTCCAAATATGATGGGTTTAGGCTTACGTACCTTGGTTATGATTTTCTTGCGATTAAGACCTTGGTAAATCGTGGGGTGTTTACAGCTGTAGGACGTCAACTTGGGGTTGGAAAAGAATCTGATATCTTTGAGGTTGCACGGGAAGATGGTACCGTTTTAGCGATGAAGTTGCATAGGCTTGGGAGAACTTCTTTTAAGGCTGTCAAATCTAAGCGTGATTACTTGAGGCAT | |||||||||
gi|218803881|gb|FC917775.1|FC917775 IC0AAA65DA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DA01, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): CGTCGTCGCTCGCCCCCACCACGCCCCGTCCAGCACACGCAACCCAAATTAAAATTTCCTCTCATAACTTTCTCACTAGCCAAACTGAACCGAAATTTTAATTTTTCGTAGTTAAATAAAAATTAATTGGGCGTTTAAATGTCAACCCAATCTCAATGTCAACGCTTTCGAATCGGCTATGCTCTTGCTCCTAAGAAAGGGCAAAGCTTGATCCAACCTTCTCTTCTAACCAAAGCCTCCGAACGAGGCATCGACTTAATCCCCATCGATCCCATCAAACCCTTGATCGAACAAGGACCGTTCGATTGCATCGTCCACAAGTTGTACGGCCCCGATTGGACCCGCCAGTTGCAACAGTTCTCCTCCCAAAACCCTAACGTCCCCATCATTGACTCCCCGGATTCAATCGAAAGACTCCACAATAGAATCTCAATGCTTGAAGTCGTCACCCAGTTGAAATTACATTTCGATAACGAAAAATTCGGCGTCCCGAACCAGGTTGTCGTTTCTGAAATGAAAAGTCTAACGTCGATTGAAGATTTGAAATTGACTTTCCCGGTTATAGCGAAGCCGTTGGTAGCTGATGGGAGCGTGAAGTCGCATCAAATGTACTTGATTTTCGATAGCCAAGGACTCGAGAGCATGACGGCGCCGTTTGTGTTGCAAGAGTTTGTCAATCATGGTGGGTTTATATTCAAGGTATATGTTGCTGGCATGAATGTAAAATGTGTGAAGAGAAAGTCTTTGCCTGATATTTCAGAAGAGAAGCTGAAATCTTTGAAGGGTTTTTTACCCTTTTCGCGGATATCCAATTTGATTGATAATGATAAGAAAGTTCATGATGATGGTAAGAAAAATAGTCAAG | |||||||||
gi|218843070|gb|FC900139.1|FC900139 IC0AAA98DF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA98DF07, mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): AACAAACCGACTCAAATTTAGTGACATAAACTGAGTTGTAACCCAAACCGCATTTGAACCCGAATTAACAACCCAAATCGGAACTGAATTTGAAACCGAACCGAACGGAAAAAATTTTCAACCTGTTTGAGTTGAAATCTTAAACCCGAATGGACCTGAACTGAAAACCCTAAAACCAAACTGAATAATTTTTAAAGAAATGGCAACTTCTGTTACAACTCCAAAGCTCACAACAACCTTCTATAACAGACTACCAATTACAGTCCCACTCTCTTCTCACTTTCTTTCGCTACAAAATACCCTAACTCCATTCTCTCACAATTGCTTCTCGCTTCTTTATTTTCAATGCCGACGCCGCCACGTTGCGGCTCGAGCCAAGTCTGATAATGGAGCTGAGCTGCCGAGCCACTACGACTTTGACCTCTTCACTATCGGTGCCGGCAGCGGTGGCGTCCGCGCCTCCCGTTTTGCTGCCAATTTTGGCGCTTCTGTGGCCATTTGTGAACTTCCATTTTCCACCATTTCTTCCGAAACCACGGGCGGCGTTGGCGGCACGTGTGTACTTCGTGGATGTGTGCCAAAGAAGCTTTTGGTGTACGCGTCAAAATTTTCTCATGAATTCGATGAGAGTAATGGTTTTGGATGGAAATATGGGACGGAACCGCAGCATGATTGGAGCACTTTGATTGCTAACAAAAATGCTGAGTTGCAGCGCCTTACCGGTATCTACAAGAACATTCTAATCAATGCTGGCATTACCTTAATTGAAGGTCGTGGAAAGATTGTGGACCCACACACTGTTGATGTGGATGGGAAACTGTATTCAGCTAGGCACATACTGATTTCGGTTGGGGGACGGCCCTTCATTCCTGACATTCCTGGCAGTGAATATGCCATAGATTCTGATGCTGCCCTTGATTTGCCCTCGAAGCCTGAGAAAATGCAATTGGTTGGTGGTGATACATTGCCTTGGGAATTGCTGGCATCTTCAGTGGTCTAACAAGTGA | |||||||||
gi|110853432|gb|DY275263.1|DY275263 IC0AAA38DG04RM2 CitNFL Citrus clementina cDNA 5', mRNA sequence TTTCGGTTCAGTTCGGTTCGG EST sequence (targeted fragment marked with yellow): TTGAAATCTTAAACCCGAATGGACCTGAACTGAAAACCCTAAAACCAAACTGAATAATTTTTAAAGAAATGGCAACTTCTGTTACAACTCCAAAGCTCACAACAACCTTCTATAAGAGACTACCAATTACAGTCCCACTCTCTTCTCACTTTCTTTCGCTACAAAATACTCTAACTCCATTCTCTCACAATTGCTGCTCGCTTCTTTATTTTCAATGCCAACGCCGCCACGTTGCGGCTCGAGCCAAGTCTGATAATGGAGCTGAGCTGCCGAGCCACTACGACTTTGACCTCTTCACTGTTGGTGCCGGCAGCGGTGGCGTCCGCGCCTCCCGTTTTGCCGCCAATTTTGGCGCTTCTGTGGCCATTTGTGAACTTCCATTTTCCACCATTTCTTCCGAAACCACGGGCGGCGTTGGCGGCACGTGTGTACTTCGTGGATGTGTGCCAAAGAAGCTTTTGGTGTACGCGTCAAAATTTTCTCATGAATTCGATGAGAGTAATGGTTTTGGATGGAAATATGGGACGGAACCGCAGCATGATTGGAGCACTTTGATTGCTAACAAAAATGCTGAGTTGCAGCGCCTTACCGGTATCTACAAGAACATTCTAATCAATGCTGGCATTACCTTAATTGAAGGTCGTGGAAAGATTGTGGACCCACACACTGTTGATGTGGATGGGAAACTGTATTCAGCTAGGCACATACTGATTTCGGTTGGGGGACGGCCCTTCATTCCTGACATTCCTGGCAGTGAATATGCAATAGATTCTGATGCTGCCCTTGATTTGCCCTCGAAGCCTGAGAAAATTGCAATTGTTGGTGGTGGATACATTGCCTTGGAATTTGCTGGCATCTTCAGTGGTCTAACAAGTGAGGTCCACGTATTTATACGGCAGAAGAAAGTTTTAAGGGGTTTCGATGAAATATACGAGATTTTGTTGCTGAACGGATGTCTCTGAGAAGGATTGAGTTCACACTGAGGAGTCACCTCAGGCTATCCTGAATCAACAAACGGTTCCTATCTGTGAAGACAATAAAGGAAAATTTAAAGGCTCTCTCAGGTAAGGTTTGCACTGGACCCAGGCTAATACAAAAAATTAGTTTTGGGAAAAGGGGGGGGGCAAAATAACCAAAAAAGAAAGCTAATAAGGGTTAAAAAAAATTTGGGTAACACCCTTCCTTTCCCTTTTTGTTTGGGGGGGGGAAGAAAAAAAAAAAAAAAATAATAACATCATGTCGCCCTCTTGGTTTGGTGGGGGGGGGGGGGGGGGGGGGGGGCGGCTCCCCCAAAAACAACTTTTTTTTTTT | |||||||||